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DESE
•
reset
2
votes
2
replies
549
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
6 months ago
BioinfGuru
▴ 70
0
votes
1
reply
387
views
collapseReplicates dimension error
DESeq2
Dese
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Léa
• 0
0
votes
3
replies
559
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 12 months ago by
Xu
• 0
0
votes
2
replies
569
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
12 months ago
pl23
• 0
0
votes
2
replies
863
views
Linear Model Fitting and Colinearity
dese
DESeq2
14 months ago
Hugo
• 0
0
votes
5
replies
1.1k
views
DESeq2 analysis
DESe
DESeq2
18 months ago
Adèle
• 0
0
votes
2
replies
1.8k
views
Handling NA's in Deseq2
Dese
DESeq2
20 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Alina
• 0
4
votes
5
replies
1.8k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 8 months ago by
ij283
• 0 • written 22 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.1k
views
Merging two plated in R
dese
DESeq2
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.0 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
799
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
hpapoli
• 0
16 results • Page
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Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I watched https://www.youtube.com/watch?v=npto50RJpDc and that shows some principles that are not followed in the markup for the tables at …
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I second the thanks for this post. I just tried the screen reader with macOS and see that the handling of our package tables is poor. How…
Comment: Web accessibility of Bioconductor.org
by
Michael Love
43k
hello. Thanks for your post, I'll post this also to the biocwebsite channel on the Bioconductor community slack. https://community-bioc.sl…
Answer: KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
by
Jessica
• 0
Nevermind. Just had to change to Uniprot IDs and it worked :)
Votes
Store Matrix in DataFrame Cell
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
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