Bioconductor DEXSEq

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DEXSeq

updated 25 days ago by Alejandro Reyes ★ 1.9k • written 27 days ago by Clyde • 0

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120

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 25 days ago by Michael Love 42k • written 25 days ago by 09191919 • 0

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178

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DEXSeq

updated 13 days ago by Alejandro Reyes ★ 1.9k • written 25 days ago by Alessia • 0

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124

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DEXSeq

updated 7 days ago by Michael Love 42k • written 7 days ago by Sara • 0

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DEXSeq

13 hours ago • updated 12 hours ago Sara • 0

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DEXSeq SGSeq

19 days ago • updated 14 days ago Sara • 0

6 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30

I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…

Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k

The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…

Answer: Store output of matchPWM() by mat149 ▴ 70

hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …

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Comment: Store output of matchPWM()

Answer: Store output of matchPWM()

Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'

ChipQC 'names' attribute [9] must be the same length as the vector [2]'

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Scholar to mat149 ▴ 70