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NanoporeRNASeq LongRead Normalization ShortRead IlluminaRNASeq

updated 23 hours ago by Jonathan Göke ▴ 30 • written 7 days ago by Bernardo • 0

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Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k

The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.

Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0

James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…

Answer: How to map geneIds to ENTREZIDs by James W. MacDonald 62k

You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…

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Answer: How to map geneIds to ENTREZIDs

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