Bioconductor IsoformSwitchAnalyzeR

Showing : IsoformSwitchAnalyzeR • reset

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Isoform IsoformSwitchAnalyzeR

22 days ago Craig • 0

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263

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dplyr IsoformSwitchAnalyzeR

updated 5 weeks ago by alastair.fortune • 0 • written 6 weeks ago by ramon.dslps • 0

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721

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AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by bpshtiwan ▴ 10

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442

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rnaseq IsoformSwitchAnalyzeR

updated 9 months ago by k.vitting.seerup ▴ 120 • written 10 months ago by Ryan • 0

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337

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IsoformSwitchAnalyzeR

13 months ago venura • 0

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982

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 23 months ago by k.vitting.seerup ▴ 120 • written 2.2 years ago by jbono ▴ 10

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504

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IsoformSwitchAnalyzeR

updated 23 months ago by k.vitting.seerup ▴ 120 • written 24 months ago by jbono ▴ 10

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819

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 3.6 years ago by k.vitting.seerup ▴ 120 • written 3.7 years ago by asmita • 0

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1.5k

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isoformswitchanalyzeR rna-seq splice-variants

updated 4.0 years ago by eshelden ▴ 40 • written 4.2 years ago by saddamhusain77 • 0

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1.8k

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isoformswitchanalyzeR tximport rnaseq salmon

updated 4.2 years ago by k.vitting.seerup ▴ 120 • written 4.2 years ago by saddamhusain77 • 0

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878

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IsoformSwitchAnalyzeR

updated 4.2 years ago by k.vitting.seerup ▴ 120 • written 4.2 years ago by maya.kappil ▴ 20

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795

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isoformswitchanalyzer isoform differential isoform usage

updated 4.5 years ago by k.vitting.seerup ▴ 120 • written 4.5 years ago by A ▴ 40

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958

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

5.0 years ago rbenel ▴ 30

13 results • Page 1 of 1

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Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…

Comment: Extract Limma Adjusted Values for Plotting by ATpoint ★ 2.9k

Yes, with normalized counts on log2 scale.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…

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A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Awards • All

Scholar to Mike Smith ★ 6.0k