Showing : DEXSeq • reset
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DEXSeq design formula for multiple variable
DEXSeq
3 hours ago • updated 2 hours ago Sara • 0
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How to save the DEXSeq results
DEXSeq
updated 7 days ago by 42k • written 7 days ago by • 0
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Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 13 days ago by ★ 1.9k • written 25 days ago by • 0
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how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
19 days ago • updated 14 days ago Sara • 0
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Adding columns to DEXSeqResults object
DEXSeq
updated 25 days ago by ★ 1.9k • written 26 days ago by • 0
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ONT long-read RNA sequencing - data analysis options
DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq
updated 25 days ago by 42k • written 25 days ago by • 0
6 results • Page 1 of 1
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Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue by shepherl 3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis by Guido Hooiveld ★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
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A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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