Bioconductor DeSeq2

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RNA-seq DESeq2

updated 20 minutes ago by Michael Love 41k • written 39 minutes ago by Reza • 0

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DESeq2

1 hour ago Zainab • 0

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115

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DESeq2 design coldata

updated 6 hours ago by James W. MacDonald 65k • written 22 hours ago by arfranco ▴ 130

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DESeq2

1 day ago • updated 20 hours ago kcarey • 0

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102

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

3 days ago • updated 10 hours ago Aurora • 0

5 results • Page 1 of 1

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Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

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