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Des
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0
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3
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239
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DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 11 weeks ago by
fedor.bezrukov
▴ 10
0
votes
1
reply
550
views
unreal negative log2fc values
DESeq2
des
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
Atul K.
• 0
2
votes
9
replies
1.7k
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Alexandre
• 0
0
votes
1
reply
576
views
Bioinformatics student
Des
DESeq2
updated 19 months ago by
hemantcnaik
• 0 • written 19 months ago by
Sahar
• 0
2
votes
2
replies
752
views
With DESeq2 "Not full rank" Error with design
DESeq2
DEs
19 months ago
feather-W
• 0
0
votes
1
reply
871
views
Design structure
DESeq2
des
updated 2.9 years ago by
Michael Love
43k • written 3.0 years ago by
Devin
• 0
0
votes
1
reply
970
views
Design Matrix Singularity Error
DES
DESIGN
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
mike
• 0
0
votes
1
reply
1.1k
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
heikki.sarin
▴ 10
8 results • Page
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Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
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Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
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Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
• 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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