Bioconductor Des

Showing : Des • reset

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267

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des DESeq2

written 3 months ago by fedor.bezrukov ▴ 10

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632

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DESeq2 des

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by Atul K. • 0

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1.8k

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by Alexandre • 0

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623

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Des DESeq2

updated 19 months ago by hemantcnaik • 0 • written 19 months ago by Sahar • 0

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776

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DESeq2 DEs

20 months ago feather-W • 0

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892

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DESeq2 des

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by Devin • 0

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987

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DES DESIGN

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by mike • 0

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1.1k

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DESeq2 DES

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by heikki.sarin ▴ 10

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Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Answer: p.adjust BH Question by Gordon Smyth 53k

Duplicate of https://support.bioconductor.org/p/41077/

Answer: Large logFC but somewhat high FDR by Gordon Smyth 53k

Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …

Comment: After running samtools, the featureCounts command crashed. by MarcHintz99 • 0

Thanks for shairng https://subread.sourceforge.net/

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Comment: upstream git branches of bioc-release

A: p.adjust BH generates duplicate values

Answer: gene Set with high AUC score but no cells assigned to cell type

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