Showing : Des • reset
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DESeq2 inconsistent fits depending on model design with interacting factors
des DESeq2
written 11 weeks ago by ▴ 10
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unreal negative log2fc values
DESeq2 des
updated 16 months ago by 68k • written 16 months ago by • 0
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1.7k
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 18 months ago by 68k • written 18 months ago by • 0
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Bioinformatics student
Des DESeq2
updated 18 months ago by • 0 • written 18 months ago by • 0
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
19 months ago feather-W • 0
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Design structure
DESeq2 des
updated 2.9 years ago by 43k • written 3.0 years ago by • 0
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970
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Design Matrix Singularity Error
DES DESIGN
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 10
8 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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