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Dese
•
reset
4
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4
replies
1.2k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 10 weeks ago by
feather-W
• 0 • written 13 months ago by
Bernardo
▴ 10
3
votes
3
replies
938
views
Merging two plated in R
dese
DESeq2
updated 2.0 years ago by
James W. MacDonald
66k • written 2.0 years ago by
lmrogers34
▴ 10
2
votes
17
replies
1.8k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 12 months ago by
Michael Love
42k • written 12 months ago by
Alina
• 0
2
votes
3
replies
1.0k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
glennli
• 0
1
vote
3
replies
1.4k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
2.3 years ago
aedavids
▴ 20
0
votes
5
replies
854
views
DESeq2 analysis
DESe
DESeq2
10 months ago
Adèle
• 0
0
votes
2
replies
873
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
2.6 years ago
wilfried.guiblet
• 0
0
votes
2
replies
304
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
4 months ago • updated 3 months ago
pl23
• 0
0
votes
2
replies
451
views
Linear Model Fitting and Colinearity
dese
DESeq2
5 months ago
Hugo
• 0
0
votes
2
replies
786
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 3.5 years ago by
Michael Love
42k • written 3.5 years ago by
hpapoli
• 0
0
votes
2
replies
276
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
updated 3 months ago by
ATpoint
★ 4.2k • written 3 months ago by
Xu
• 0
0
votes
2
replies
641
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 2.6 years ago by
Michael Love
42k • written 2.6 years ago by
Dinesh
• 0
0
votes
1
reply
196
views
collapseReplicates dimension error
DESeq2
Dese
updated 9 weeks ago by
Michael Love
42k • written 9 weeks ago by
Léa
• 0
0
votes
5
replies
3.4k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.0 years ago by
Basti
▴ 780 • written 2.0 years ago by
Maryam.sed1400
• 0
0
votes
2
replies
1.0k
views
Handling NA's in Deseq2
Dese
DESeq2
12 months ago • updated 11 months ago
Asger Mølgaard
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot install oligo on Fedora
by
mbassal
• 0
so whats the solution for this error?
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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