Bioconductor Dese

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DESE DESeq2

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by Maryam.sed1400 • 0

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1.8k

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DESeq2 lfcshrink DESe

updated 12 months ago by Michael Love 42k • written 12 months ago by Alina • 0

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DESeq2 dese

2.3 years ago aedavids ▴ 20

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DESeq2 Dese DifferentialRegulation differe

updated 10 weeks ago by feather-W • 0 • written 13 months ago by Bernardo ▴ 10

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1.0k

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Dese DESeq2

12 months ago • updated 11 months ago Asger Mølgaard • 0

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1.0k

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DESeq2 DESe

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by glennli • 0

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938

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dese DESeq2

updated 2.0 years ago by James W. MacDonald 66k • written 2.0 years ago by lmrogers34 ▴ 10

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873

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DESeq2 dese

2.6 years ago wilfried.guiblet • 0

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853

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DESe DESeq2

10 months ago Adèle • 0

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786

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DESeq2

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by hpapoli • 0

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641

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DESe DESeq2

updated 2.6 years ago by Michael Love 42k • written 2.6 years ago by Dinesh • 0

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450

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dese DESeq2

5 months ago Hugo • 0

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303

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dese DESeq2

4 months ago • updated 3 months ago pl23 • 0

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275

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DESeq2 dese

updated 3 months ago by ATpoint ★ 4.2k • written 3 months ago by Xu • 0

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195

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DESeq2 Dese

updated 9 weeks ago by Michael Love 42k • written 9 weeks ago by Léa • 0

15 results • Page 1 of 1

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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k

After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…

Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k

Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

Votes

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

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Popular Question to Robert Castelo ★ 3.3k