Biostar Enrichment

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enrichment GSVA enrichplot ssGSEA

updated 7 weeks ago by Robert Castelo ★ 2.9k • written 7 weeks ago by Davide • 0

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enrichment INDUCE-Seq

7 months ago Mark Dunning ★ 1.1k

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Comment: Need help for ProStaR Stand-alone install by Wang • 0

Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI …

Answer: Discrepancy between plot colours during exomeCopy tutorial by Michael Love 37k

I’m not sure why the plot looks this way. You may want to look at one sample at a time. Also note there are more developed tools, I haven’t…

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…

Answer: Help with constructing design matrix for edgeR/limma by Gordon Smyth 45k

If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…

Comment: edgeR : results from goana and kegga functions show opposite sig. p-value by sharvari gujja ▴ 30

Thank you so much!

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Teacher to Michael Love 37k