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Showing :
enrichment
•
reset
0
votes
0
replies
237
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
5 months ago
Priya
• 0
0
votes
4
replies
843
views
Questions about non-model organisms gene enrichment analysis
non-model
enrichment
organisms
analysis
updated 10 months ago by
Guido Hooiveld
★ 3.7k • written 12 months ago by
yuhang
• 0
0
votes
0
replies
356
views
Enrichment in genomic regions
Enrichment
clusterPro
WGCNA
15 months ago
María José
• 0
0
votes
2
replies
656
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 15 months ago by
swbarnes2
★ 1.3k • written 15 months ago by
ac.mainul.mmb
• 0
1
vote
2
replies
1.2k
views
enrichKEGG results for non-model organism
clusterProfiler
enrichment
KEGG
updated 6 months ago by
Aciole.D
▴ 10 • written 16 months ago by
AP
• 0
1
vote
3
replies
3.7k
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 18 months ago by
Robert Castelo
★ 3.0k • written 18 months ago by
Davide
• 0
0
votes
0
replies
501
views
Over-enrichment of cytobands in INDUCE-Seq
enrichment
INDUCE-Seq
24 months ago
Mark Dunning
★ 1.1k
2
votes
2
replies
695
views
Hypergeometric (gene set enrichment) test using "Categories" package
enrichment
hypergeometric
Categories
2.4 years ago
josmantorres
▴ 10
0
votes
7
replies
1.8k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 2.9 years ago by
Gordon Smyth
48k • written 2.9 years ago by
lessismore
▴ 20
4
votes
4
replies
1.0k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO
Gene Ontology
enrichment
panther.db
updated 3.0 years ago by
Gordon Smyth
48k • written 3.0 years ago by
Brian Smith
▴ 120
1
vote
2
replies
7.4k
views
Interpreting TSS Enrichment Score Summary
atacseq
atacseqqc
tss
enrichment
updated 3.1 years ago by
Ou, Jianhong
★ 1.3k • written 3.2 years ago by
Arpi Beshlikyan
• 0
0
votes
0
replies
614
views
reactomePA error input file
r
reactomePA
enrichment
updated 3.3 years ago by
Kevin Blighe
3.8k • written 3.3 years ago by
camillab.
▴ 10
3
votes
3
replies
3.6k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 3 months ago by
Guido Hooiveld
★ 3.7k • written 3.4 years ago by
t.b.kuipers
• 0
5
votes
7
replies
1.6k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 3.5 years ago by
Gordon Smyth
48k • written 3.5 years ago by
Raito92
▴ 60
2
votes
1
reply
942
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics
enrichment
Perseus
3.6 years ago
harelarik
▴ 60
3
votes
3
replies
889
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 4.3 years ago by
James W. MacDonald
63k • written 4.3 years ago by
t.bergmann
• 0
1
vote
1
reply
900
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
4.7 years ago
David ROUX
▴ 20
2
votes
3
replies
752
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression
enrichment
RNA-seq
DESeq2
updated 4.7 years ago by
Michael Love
40k • written 4.7 years ago by
rodrigo.duarte88
▴ 30
0
votes
0
replies
722
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.1 years ago
zhu
• 0
0
votes
0
replies
1.0k
views
Enrichment of GWAS SNPs in regulatory regions
genomicranges
enrichment
fisher
7.0 years ago
enricoferrero
▴ 660
1
vote
2
replies
2.1k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq
450k
enrichment
updated 8.6 years ago by
belinda.phipson
▴ 40 • written 8.6 years ago by
Ed Schwalbe
▴ 10
0
votes
0
replies
1.5k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
8.9 years ago
Guangchuang Yu
★ 1.2k
22 results • Page
1 of 1
Recent ...
Replies
Comment: tximport error: vroom
by
Benji Bromberg
• 0
Of course! Let me know if you figure it out.
Comment: tximport error: vroom
by
RLiu
▴ 10
Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…
Comment: tximport error: vroom
by
RLiu
▴ 10
I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).
Comment: tximport error: vroom
by
Benji Bromberg
• 0
I also ran into this same issue today. All my quant.sf files are the same length, were generated within the last month, [do not contain com…
Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
by
James W. MacDonald
63k
Using `.set.seed` only sets the seed for the first call to any random number generation, after which the seed is incremented. As an example…
Votes
tximport error: vroom
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
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