Showing : enrichment • reset
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
5 months ago Priya • 0
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4
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843
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Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 10 months ago by ★ 3.7k • written 12 months ago by • 0
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356
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
15 months ago María José • 0
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2
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656
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 15 months ago by ★ 1.3k • written 15 months ago by • 0
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2
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1.2k
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enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 6 months ago by ▴ 10 • written 16 months ago by • 0
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3
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3.7k
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GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 18 months ago by ★ 3.0k • written 18 months ago by • 0
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501
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
24 months ago Mark Dunning ★ 1.1k
2
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2
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695
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
2.4 years ago josmantorres ▴ 10
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7
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1.8k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 2.9 years ago by 48k • written 2.9 years ago by ▴ 20
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4
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1.0k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.0 years ago by 48k • written 3.0 years ago by ▴ 120
1
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2
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7.4k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 3.1 years ago by ★ 1.3k • written 3.2 years ago by • 0
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0
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reactomePA error input file
r reactomePA enrichment
updated 3.3 years ago by 3.8k • written 3.3 years ago by ▴ 10
3
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3
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3.6k
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Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 3 months ago by ★ 3.7k • written 3.4 years ago by • 0
5
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7
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1.6k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 3.5 years ago by 48k • written 3.5 years ago by ▴ 60
2
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1
reply
942
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
3.6 years ago harelarik ▴ 60
3
votes
3
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889
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.3 years ago by 63k • written 4.3 years ago by • 0
1
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1
reply
900
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
4.7 years ago David ROUX ▴ 20
2
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3
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752
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 4.7 years ago by 40k • written 4.7 years ago by ▴ 30
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722
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.1 years ago zhu • 0
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1.0k
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
7.0 years ago enricoferrero ▴ 660
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2
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2.1k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 8.6 years ago by ▴ 40 • written 8.6 years ago by ▴ 10
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1.5k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
8.9 years ago Guangchuang Yu ★ 1.2k
22 results • Page 1 of 1
Recent ...
Replies
Comment: tximport error: vroom by Benji Bromberg • 0
Of course! Let me know if you figure it out.
Comment: tximport error: vroom by RLiu ▴ 10
Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…
Comment: tximport error: vroom by RLiu ▴ 10
I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).
Comment: tximport error: vroom by Benji Bromberg • 0
I also ran into this same issue today. All my quant.sf files are the same length, were generated within the last month, [do not contain com…
Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s by James W. MacDonald 63k
Using `.set.seed` only sets the seed for the first call to any random number generation, after which the seed is incremented. As an example…
Votes
tximport error: vroom
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
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