Bioconductor Pathway

Showing : Pathway • reset

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377

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pathway ORA limma CAMERA DGE

updated 3 months ago by Gordon Smyth 48k • written 3 months ago by manuelsokolov • 0

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776

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pathway SBGNview Reactome pathview PANTHER

written 2.7 years ago by Luo Weijun ★ 1.6k

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819

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pathway KEGGREST GSEA

updated 2.7 years ago by Kevin Blighe 3.9k • written 2.7 years ago by MOHAMMAD • 0

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903

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pathway KEGG annotation annotationhub

updated 3.5 years ago by James W. MacDonald 64k • written 3.5 years ago by Bogdan ▴ 670

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3.9k

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R ClusterProfiler Enrichment Pathway

updated 5 months ago by Guido Hooiveld ★ 3.8k • written 3.6 years ago by t.b.kuipers • 0

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1.4k

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pathview kegg r pathway

4.0 years ago AZ ▴ 30

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904

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limma pathway

updated 4.3 years ago by mikhael.manurung ▴ 270 • written 4.3 years ago by Dario Strbenac ★ 1.5k

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687

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kegg pathway pathview

4.7 years ago Ahdee ▴ 50

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629

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IHW deseq2 Pathway

updated 4.7 years ago by Michael Love 41k • written 4.8 years ago by guidobarzaghi ▴ 20

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1.3k

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deseq2 pathway ihw

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by guidobarzaghi ▴ 20

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785

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igraph miR2Pathway Pathway page_rank

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by genomic8328 ▴ 10

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4.1k

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pathview KEGGgraph gage pathway pathway analysis

6.4 years ago • updated 6.3 years ago Luo Weijun ★ 1.6k

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1.3k

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pathway paxtools

9.1 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

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Comment: Ensembl down??? by bas_work ▴ 20

I want to link 'external_gene_names' (mouse, multiple lists) with the ensembl gene IDs and HGNC symbols of human orthologues using getLDS()…

Answer: SingleR Book Not Found by Peter Hickey ▴ 650

It's not gone, but it also hasn't successfully built since the most recent Bioconductor release ([https://bioconductor.org/checkResults/rel…

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by James W. MacDonald 64k

The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by Michael Love 41k

argument txi is missing, with no default This means the function was expecting a named argument txi Check the man page for the funct…

Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0

Thank you so much! This worked! It installed from source with no problem and after restarting my R session, everything loads properly now.…

Votes

Answer: gseGO input list

Comment: Problem loading HDF5Array in R 4.3.2

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default

Comment: Ensembl down???

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