Bioconductor Pathway

Showing : Pathway • reset

vote

replies

613

views

pathway ORA limma CAMERA DGE

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by manuelsokolov • 0

votes

902

views

pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

votes

964

views

pathway KEGGREST GSEA

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by MOHAMMAD • 0

votes

replies

1.1k

views

pathway KEGG annotation annotationhub

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by Bogdan ▴ 670

votes

replies

4.6k

views

R ClusterProfiler Enrichment Pathway

updated 10 months ago by Guido Hooiveld ★ 3.9k • written 4.0 years ago by t.b.kuipers • 0

votes

replies

1.7k

views

pathview kegg r pathway

4.4 years ago AZ ▴ 30

votes

replies

1.0k

views

limma pathway

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by Dario Strbenac ★ 1.5k

votes

replies

769

views

kegg pathway pathview

5.1 years ago Ahdee ▴ 50

votes

replies

721

views

IHW deseq2 Pathway

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by guidobarzaghi ▴ 20

votes

replies

1.5k

views

deseq2 pathway ihw

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by guidobarzaghi ▴ 20

votes

894

views

igraph miR2Pathway Pathway page_rank

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by genomic8328 ▴ 10

votes

replies

4.4k

views

pathview KEGGgraph gage pathway pathway analysis

6.8 years ago • updated 6.7 years ago Luo Weijun ★ 1.6k

votes

replies

1.4k

views

pathway paxtools

9.5 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

Recent ...

Replies

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Votes

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All