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Showing :
Enrichment
•
reset
0
votes
0
replies
60
views
Enrichment in genomic regions
Enrichment
clusterPro
WGCNA
5 weeks ago
María José
• 0
0
votes
2
replies
178
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 5 weeks ago by
swbarnes2
★ 1.1k • written 6 weeks ago by
ac.mainul.mmb
• 0
0
votes
0
replies
124
views
enrichKEGG results for non-model organism
clusterProfiler
enrichment
KEGG
10 weeks ago
AP
• 0
1
vote
3
replies
670
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 4 months ago by
Robert Castelo
★ 2.9k • written 4 months ago by
Davide
• 0
0
votes
0
replies
215
views
Over-enrichment of cytobands in INDUCE-Seq
enrichment
INDUCE-Seq
10 months ago
Mark Dunning
★ 1.1k
2
votes
2
replies
323
views
Hypergeometric (gene set enrichment) test using "Categories" package
enrichment
hypergeometric
Categories
15 months ago
josmantorres
▴ 10
0
votes
7
replies
941
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 21 months ago by
Gordon Smyth
46k • written 21 months ago by
lessismore
▴ 20
4
votes
4
replies
648
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO
Gene Ontology
enrichment
panther.db
updated 23 months ago by
Gordon Smyth
46k • written 23 months ago by
Brian Smith
▴ 120
1
vote
2
replies
3.6k
views
Interpreting TSS Enrichment Score Summary
atacseq
atacseqqc
tss
enrichment
updated 2.0 years ago by
Ou, Jianhong
★ 1.3k • written 2.0 years ago by
Arpi Beshlikyan
• 0
0
votes
0
replies
382
views
reactomePA error input file
r
reactomePA
enrichment
updated 2.2 years ago by
Kevin Blighe
3.6k • written 2.2 years ago by
camillab.
▴ 10
2
votes
1
reply
1.5k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 2.3 years ago by
Kevin Blighe
3.6k • written 2.3 years ago by
t.b.kuipers
• 0
5
votes
7
replies
715
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 2.3 years ago by
Gordon Smyth
46k • written 2.3 years ago by
Raito92
▴ 60
2
votes
1
reply
448
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics
enrichment
Perseus
2.5 years ago • updated 2.4 years ago
harelarik
▴ 50
3
votes
3
replies
556
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 3.1 years ago by
James W. MacDonald
60k • written 3.1 years ago by
t.bergmann
• 0
1
vote
1
reply
590
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
3.6 years ago
David ROUX
▴ 10
2
votes
3
replies
492
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression
enrichment
RNA-seq
DESeq2
updated 3.6 years ago by
Michael Love
37k • written 3.6 years ago by
rodrigo.duarte88
▴ 30
0
votes
0
replies
493
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
4.0 years ago
zhu
• 0
0
votes
0
replies
788
views
Enrichment of GWAS SNPs in regulatory regions
genomicranges
enrichment
fisher
5.9 years ago
enricoferrero
▴ 620
1
vote
2
replies
1.8k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq
450k
enrichment
updated 7.5 years ago by
belinda.phipson
▴ 10 • written 7.5 years ago by
Ed Schwalbe
▴ 10
0
votes
0
replies
1.2k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
7.7 years ago
Guangchuang Yu
★ 1.2k
20 results • Page
1 of 1
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Replies
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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Gordon Smyth
46k
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gv
▴ 40
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Hervé Pagès
15k
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ta_awwad
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