Showing : Enrichment • reset
2
votes
2
replies
162
views
Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
4 months ago josmantorres ▴ 10
0
votes
7
replies
472
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 10 months ago by 43k • written 10 months ago by • 0
4
votes
4
replies
360
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 12 months ago by 43k • written 12 months ago by ▴ 120
1
vote
2
replies
1.4k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 13 months ago by ★ 1.2k • written 13 months ago by • 0
0
votes
0
replies
193
views
reactomePA error input file
r reactomePA enrichment
updated 15 months ago by 3.4k • written 15 months ago by ▴ 10
2
votes
1
reply
561
views
Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 17 months ago by 3.4k • written 17 months ago by • 0
4
votes
7
replies
347
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 17 months ago by 43k • written 17 months ago by ▴ 50
2
votes
1
reply
205
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
19 months ago • updated 18 months ago harelarik ▴ 50
3
votes
3
replies
378
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 2.2 years ago by 58k • written 2.2 years ago by • 0
1
vote
1
reply
418
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
2.7 years ago David ROUX ▴ 10
2
votes
3
replies
373
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 2.7 years ago by 34k • written 2.7 years ago by ▴ 30
0
votes
0
replies
384
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
3.1 years ago zhu • 0
0
votes
0
replies
688
views
Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
5.0 years ago enricoferrero ▴ 570
1
vote
2
replies
1.6k
views
Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 10
0
votes
0
replies
1.1k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
6.8 years ago Guangchuang Yu ★ 1.2k
15 results • Page 1 of 1
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Replies
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
Answer: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, At this moment (9:30am CET) I can't reproduce this error with the current release version of the package. I have executed the follow…
Comment: Extracting normalized counts in MEDIPS by Lukas ▴ 10
Hi Ishepard, I am glad to hear that the quantile normalized values give you reasonable visualizations. The TMM normalization happens withi…
Comment: Extracting normalized counts in MEDIPS by lshepard ▴ 40
Hi Lukas, thank you for the quick reply! Understood on the warning. Makes sense now. Regarding visualization - simply put, yes on a "per …
Votes
Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
A: Extracting normalized counts in MEDIPS
Answer: "full model matrix is less than full rank"
Comment: Unique GPos taking into account mcols
Awards • All
Scholar to Robert Castelo ★ 2.7k
Prophet to lshepard ▴ 40
Popular Question to Michael Stadler ▴ 340
Scholar to Mike Smith ★ 5.1k
Scholar to Gordon Smyth 43k
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