Showing : Enrichment • reset
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
5 weeks ago María José • 0
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2
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178
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 5 weeks ago by ★ 1.1k • written 6 weeks ago by • 0
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enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
10 weeks ago AP • 0
1
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3
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670
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GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 4 months ago by ★ 2.9k • written 4 months ago by • 0
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
10 months ago Mark Dunning ★ 1.1k
2
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2
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323
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
15 months ago josmantorres ▴ 10
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7
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 21 months ago by 46k • written 21 months ago by ▴ 20
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4
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648
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Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 23 months ago by 46k • written 23 months ago by ▴ 120
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2
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3.6k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 2.0 years ago by ★ 1.3k • written 2.0 years ago by • 0
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0
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reactomePA error input file
r reactomePA enrichment
updated 2.2 years ago by 3.6k • written 2.2 years ago by ▴ 10
2
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1
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1.5k
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Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 2.3 years ago by 3.6k • written 2.3 years ago by • 0
5
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7
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715
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Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 2.3 years ago by 46k • written 2.3 years ago by ▴ 60
2
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1
reply
448
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
2.5 years ago • updated 2.4 years ago harelarik ▴ 50
3
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3
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556
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 3.1 years ago by 60k • written 3.1 years ago by • 0
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1
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590
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
3.6 years ago David ROUX ▴ 10
2
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3
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492
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 3.6 years ago by 37k • written 3.6 years ago by ▴ 30
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
4.0 years ago zhu • 0
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0
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788
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
5.9 years ago enricoferrero ▴ 620
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2
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1.8k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 7.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 10
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
7.7 years ago Guangchuang Yu ★ 1.2k
20 results • Page 1 of 1
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Replies
Comment: MMDiff2 memory issues by e.iich • 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Comment: errors in annotation by James W. MacDonald 60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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Popular Question to e.iich • 0
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