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FeatureCount
•
reset
0
votes
0
replies
849
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
2.2 years ago
kthapa
• 0
0
votes
2
replies
2.1k
views
output file conversion from FeatureCount to DESeq2 - no duplicate for samples
DESeq2
FeatureCount
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
Jiayi
• 0
0
votes
1
reply
1.1k
views
quantifying exom reads featureCount
ExomeSeq
featureCount
4.1 years ago
adR
▴ 40
4
votes
4
replies
2.5k
views
Issues loading a BAM file resulted from featurecounts
featurecount
rsubread
GenomicAlignments
5.7 years ago
Konstantinos Yeles
▴ 90
2
votes
6
replies
3.8k
views
featureCount error - cannot identify gene_id
dexseq
rsubread
featureCount
software error
updated 6.0 years ago by
Yang Liao
▴ 450 • written 6.0 years ago by
seung.ho.steven.choi
• 0
2
votes
1
reply
2.7k
views
How to change stringtie gene_id names with ref_gene_id when performing featureCount
featureCount
rna-seq
gene_id
re_gene_id
stringtie
updated 6.9 years ago by
Wei Shi
★ 3.6k • written 6.9 years ago by
IRAIA.MAIALEN
• 0
6 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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