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Fluidigm
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963
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Combine scRNAseq data for bulk analysis using DESeq2
DESeq2
scRNAseq
Fluidigm
19 months ago • updated 18 months ago
evocanres
• 0
0
votes
1
reply
1.2k
views
Fluidigm data analysis - how to get adj p-values for 96 genes
fluidigm
wilcoxon signed rank test
t.test
adj.p.value
normal distribution
updated 8.1 years ago by
Gordon Smyth
50k • written 8.1 years ago by
dk364
• 0
0
votes
1
reply
1.0k
views
Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm
normalization
limma
pcr
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
raf4
▴ 20
0
votes
0
replies
820
views
HTqPCR for Fluidigm Results
htqpcr
fluidigm
6.2 years ago
rhonce
• 0
0
votes
0
replies
916
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr
bioconductor
fluidigm
biomark
6.2 years ago
reed27
• 0
0
votes
1
reply
528
views
Limma for Fluidigm high throughput PCR
limma
Limma
Fluidigm
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
jms2520
▴ 10
6 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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