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GEO data
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5
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GEOquery Fails to Download Series Matrix File
geoquery
ncbi geo
geo data
7.5 years ago
fongchunchan
▴ 30
0
votes
3
replies
1.6k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
8.6 years ago
sz
• 0
0
votes
2
replies
1.3k
views
WGCNA analysis with NCBI GEO Series Matrix file?
WGCNA
geo data
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
mathavanbioinfo
▴ 20
1
vote
1
reply
1.3k
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GEOquery: Diagnosing SOFT file error
geoquery
geo data
geo
soft files
updated 6.1 years ago by
Sean Davis
21k • written 6.1 years ago by
supermanrocketboy
▴ 10
4 results • Page
1 of 1
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Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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