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GUIDEseq
•
reset
3
votes
1
reply
652
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.2 years ago by
David Kuo
• 0
2
votes
4
replies
1.5k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
2
votes
1
reply
1.2k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
1
vote
3
replies
827
views
GUIDEseq BED input error
GUIDEseq
4.4 years ago
tomas.rodriguez
▴ 10
0
votes
1
reply
679
views
GUIDEseq outputDir error
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
880
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
4
replies
971
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
860
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.3 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
Tiffany
• 0
0
votes
0
replies
403
views
GUIDEseq: read count for each offtarget
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
1
reply
547
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 24 months ago by
Julie Zhu
★ 4.3k • written 24 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
348
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
0
replies
473
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.0 years ago
sharvari gujja
▴ 40
0
votes
6
replies
1.0k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 21 months ago by
Julie Zhu
★ 4.3k • written 21 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
980
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
6.5 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
640
views
GUIDEseq bam input
GUIDEseq
bam
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
956
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
16 results • Page
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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