Bioconductor GeneRFold

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GeneRfold software error

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by nils.hassel • 0

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GeneRFold GeneR

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by vinod.acear ▴ 50

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BSgenome BSgenome GeneRfold BSgenome BSgenome GeneRfold

updated 13.6 years ago by Heidi Dvinge ★ 2.0k • written 13.6 years ago by Yuan Jian ▴ 250

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Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…

Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k

The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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