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GenomeGraphs
•
reset
0
votes
0
replies
5.1k
views
Reading GFF files into R and GenomeGraphs
Coverage
Annotation
Visualization
convert
GLAD
GenomeGraphs
rtracklayer
IRanges
Coverage
14.8 years ago
Michael Dondrup
▴ 140
0
votes
1
reply
2.0k
views
Reading GFF files into R and GenomeGraphs
Annotation
GenomeGraphs
Annotation
GenomeGraphs
updated 14.8 years ago by
Michael Lawrence
▴ 620 • written 14.8 years ago by
Michael Dondrup
▴ 140
0
votes
3
replies
2.0k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 15.6 years ago by
Steve Lianoglou
★ 13k • written 15.6 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
0
replies
1.9k
views
oncoPrint ComplexHeatmap Error
genomegraphs
8.4 years ago
Mandy
• 0
0
votes
1
reply
1.9k
views
karyogram
idiogram
GenomeGraphs
idiogram
GenomeGraphs
updated 15.9 years ago by
Oosting, J. PATH
▴ 550 • written 15.9 years ago by
Michael Gormley
▴ 60
0
votes
5
replies
1.7k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 15.5 years ago by
Camper Chih-Wei Liu
▴ 40 • written 15.6 years ago by
Michael Lawrence
▴ 620
0
votes
2
replies
1.6k
views
plotting probes along a chromosome
graph
GenomeGraphs
ASSIGN
graph
GenomeGraphs
ASSIGN
updated 12.8 years ago by
Oosting, J. PATH
▴ 550 • written 12.8 years ago by
Pete Shepard
▴ 240
0
votes
1
reply
1.6k
views
GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus
biomaRt
GenomeGraphs
Mus musculus
biomaRt
GenomeGraphs
updated 14.9 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 14.9 years ago by
Mark Robinson
★ 1.1k
3
votes
2
replies
1.6k
views
Plotting only intergenic reads on chromosomes?
gviz
GenomeGraphs
BAM
rsamtools
samtools
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Mehmet Ilyas Cosacak
• 0
0
votes
2
replies
1.5k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 15.5 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 15.5 years ago by
Daren Tan
▴ 190
0
votes
1
reply
1.3k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 12.3 years ago by
Joern Toedling
▴ 50 • written 12.3 years ago by
Iain Gallagher
▴ 930
0
votes
2
replies
1.3k
views
Unable to install package
packages
installation
GenomeGraphs
updated 4.3 years ago by
James W. MacDonald
65k • written 4.3 years ago by
alex
• 0
0
votes
1
reply
1.3k
views
Genome Graphs question
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
updated 15.1 years ago by
Wolfgang Huber
★ 13k • written 15.1 years ago by
Paul Leo
▴ 970
0
votes
0
replies
1.2k
views
GenomeGraphs plots: polygon tracks for sequencing coverage data
Sequencing
Coverage
Visualization
GenomeGraphs
Sequencing
Coverage
Visualization
12.5 years ago
Samuel Wuest
▴ 330
0
votes
3
replies
1.2k
views
ploting paired-end reads using GenomeGraphs
idiogram
GenomeGraphs
idiogram
GenomeGraphs
updated 14.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 14.4 years ago by
Ramzi TEMANNI
▴ 160
0
votes
0
replies
1.1k
views
GenomeGraphs, modify Y axis
genomegraphs
biomart
plot
graphics
8.7 years ago
koenhendriks89
• 0
0
votes
0
replies
1.1k
views
Issue with Genome Graphs
Annotation
simpleaffy
oligo
GenomeGraphs
frma
Annotation
simpleaffy
oligo
GenomeGraphs
11.5 years ago
Jeremy Ng
▴ 180
0
votes
2
replies
1.1k
views
GenomeGraphs error
GenomeGraphs
GenomeGraphs
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Droit Arnaud
▴ 130
0
votes
1
reply
1.1k
views
Error in makeGeneRegion from GenomeGraphs
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
updated 13.5 years ago by
Mike Smith
★ 6.5k • written 13.5 years ago by
Mark Dunning
★ 1.1k
0
votes
2
replies
1.0k
views
attributes in GenomeGraphs
GenomeGraphs
GenomeGraphs
updated 15.8 years ago by
Mark Robinson
★ 1.1k • written 15.8 years ago by
Amanda Miotto
▴ 120
0
votes
0
replies
1.0k
views
biomArt problems
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
15.4 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
1.0k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
12.8 years ago
Pete Shepard
▴ 240
0
votes
0
replies
979
views
New Bioconductor package: rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
16.0 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
968
views
GenomeGraphs plot colours (bug?)
graph
GenomeGraphs
graph
GenomeGraphs
15.2 years ago
Tim Rayner
▴ 270
0
votes
0
replies
942
views
bug report for GenomeGraphs
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
15.3 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
931
views
Bug in GenomeGraphs: makeGeneRegion fails on regions devoid of genes
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
15.0 years ago
Simon Anders
▴ 150
0
votes
0
replies
912
views
GenomeGraphs ideograms for mouse?
GenomeGraphs
GenomeGraphs
14.4 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
911
views
problems with GenomeGraphs
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
updated 15.8 years ago by
Steve Lianoglou
★ 13k • written 15.8 years ago by
steffen@stat.Berkeley.EDU
▴ 600
0
votes
1
reply
897
views
Multiple colours in GenomeGraphs?
GenomeGraphs
GenomeGraphs
updated 16.0 years ago by
James Bullard
▴ 70 • written 16.0 years ago by
Mark Dunning
▴ 320
0
votes
0
replies
876
views
GenomeGraphs 1.4.0 fails to plot empty GeneRegion
GenomeGraphs
GenomeGraphs
15.0 years ago
Tim Rayner
▴ 270
0
votes
1
reply
869
views
GenomeGraphs alternate input
GenomeGraphs
GenomeGraphs
updated 15.8 years ago by
James Bullard
▴ 70 • written 15.8 years ago by
Amanda Miotto
▴ 120
0
votes
0
replies
840
views
GenomeGraphs issue
affy
biomaRt
GenomeGraphs
affy
biomaRt
GenomeGraphs
14.0 years ago
Zoppoli, Gabriele NIH/NCI [G]
▴ 20
0
votes
1
reply
771
views
useMart alterations
GenomeGraphs
GenomeGraphs
updated 15.8 years ago by
Mark Robinson
★ 1.1k • written 15.8 years ago by
Amanda Miotto
▴ 120
0
votes
0
replies
759
views
Vizualization of Microarray data using GenomeGraphs
GenomeGraphs
GenomeGraphs
15.3 years ago
Philippe Thomas
▴ 30
0
votes
0
replies
754
views
Two tracks cannot be seperated
GenomeGraphs
7.9 years ago
tianf
• 0
0
votes
0
replies
739
views
Using package GenomeGraphs with genomes not in ensemble
biomaRt
GenomeGraphs
biomaRt
GenomeGraphs
14.8 years ago
Michael Dondrup
▴ 140
0
votes
0
replies
668
views
makeGenericArray in Genomegraph
genomegraphs
7.1 years ago
indranipoddar
• 0
0
votes
0
replies
663
views
transcript numbers
GenomeGraphs
GenomeGraphs
15.7 years ago
Amanda Miotto
▴ 120
38 results • Page
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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