Bioconductor GenomicAlignments

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1.1k

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VariantAnnotation Annotation GenomicRanges VariantAnnotation GenomicAlignments Annotation

11.1 years ago Valerie Obenchain ★ 6.8k

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2.5k

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VariantTools BiocParallel GenomicAlignments VariantTools BiocParallel GenomicAlignments

updated 11.3 years ago by Martin Morgan 25k • written 11.3 years ago by Guest User ★ 13k

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1.9k

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RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools

updated 11.3 years ago by Stefano Calza ▴ 90 • written 11.3 years ago by Valerie Obenchain ★ 6.8k

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1.6k

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RNASeq GenomicAlignments RNASeq GenomicAlignments

updated 11.4 years ago by Valerie Obenchain ★ 6.8k • written 11.4 years ago by Stefano Calza ▴ 90

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2.2k

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Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments

updated 11.5 years ago by Hervé Pagès 16k • written 11.5 years ago by Niu, Liang NIH/NIEHS [E] ▴ 50

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993

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Coverage GenomicAlignments Coverage GenomicAlignments

11.6 years ago Hervé Pagès 16k

106 results • Page 3 of 3

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Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k

Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

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Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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