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GenomicAlignments
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Complete variant toolbox: gmapR/VariantTools/VariantAnnotation - revived
VariantAnnotation
Annotation
GenomicRanges
VariantAnnotation
GenomicAlignments
Annotation
11.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.6k
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Worker count specification in functions using bplapply from the BiocParallel pkg
VariantTools
BiocParallel
GenomicAlignments
VariantTools
BiocParallel
GenomicAlignments
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Guest User
★ 13k
0
votes
4
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2.0k
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GenomicAlignments and QNAME collision
RNASeq
Cancer
convert
Rsamtools
GenomicAlignments
RNASeq
Cancer
convert
Rsamtools
updated 11.7 years ago by
Stefano Calza
▴ 90 • written 11.7 years ago by
Valerie Obenchain
★ 6.8k
0
votes
7
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1.7k
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GenomicAlignments and QNAME collision
RNASeq
GenomicAlignments
RNASeq
GenomicAlignments
updated 11.7 years ago by
Valerie Obenchain
★ 6.8k • written 11.7 years ago by
Stefano Calza
▴ 90
0
votes
5
replies
2.3k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Alignment
Cancer
convert
GenomicAlignments
Alignment
Cancer
convert
GenomicAlignments
updated 11.8 years ago by
Hervé Pagès
16k • written 11.8 years ago by
Niu, Liang NIH/NIEHS [E]
▴ 50
0
votes
0
replies
1.1k
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CIGAR-aware coverage
Coverage
GenomicAlignments
Coverage
GenomicAlignments
11.9 years ago
Hervé Pagès
16k
106 results • Page
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Comment: Open Positions for Doctoral Researchers in Molecular Medicine
by
TikTs33ssalpc
• 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application
by
TikTs33ssalpc
• 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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