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GenomicRanges
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fast apply on RleList
GenomicRanges
RleList
11 days ago • updated 10 days ago
story.benjamin
▴ 20
2
votes
1
reply
849
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Having Trouble Using CNE12() and CNE21() in CNEr
GenomicRanges
CNEr
12 days ago
1324087964
• 0
0
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1
reply
1.1k
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Using genomicRanges / plyranges to calculate score of peaks within intervals
plyranges
GenomicRanges
updated 11 weeks ago by
Michael Love
43k • written 4.0 years ago by
alorsonmethyle
• 0
1
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1
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1.7k
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Reducing and aggregating GRanges with gaps using plyranges
GenomicRanges
plyranges
updated 11 weeks ago by
Michael Love
43k • written 4.5 years ago by
r.a.policastro
• 0
0
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0
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224
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News:
RNAseq data analysis with R/Bioconductor (4-15 November)
DESeq2
GenomicRanges
5 months ago
info
▴ 10
3
votes
3
replies
564
views
ISO a solution to rank-order introns by transcript
GenomicRanges
GenomicFeatures
6 months ago • updated 4 months ago
mat149
▴ 80
0
votes
0
replies
353
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
8 months ago
user_bioinfo
• 0
2
votes
1
reply
458
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 11 months ago by
Michael Love
43k • written 11 months ago by
mat149
▴ 80
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Comment: DeSeq Strategies for run to run Replication
by
Michael Love
43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
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Comment: Differential expression analysis using two TCGA datasets
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
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