Bioconductor HLA

Showing : HLA • reset

3

votes

1

reply

1.2k

views

HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.8 years ago by kayla.interdonato ▴ 160 • written 5.8 years ago by Kamil Slowikowski ▴ 30

0

votes

0

replies

958

views

HLA bioconductor bioinformatics

8.3 years ago justinyi10 ▴ 10

1

vote

1

reply

1.5k

views

homo.sapiens HLA

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by a23451352 • 0

3 results • Page 1 of 1

Recent ...

Replies

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Votes

A: Multi-level experiments in Limma

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All