Bioconductor HLA

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.7 years ago by kayla.interdonato ▴ 160 • written 5.7 years ago by Kamil Slowikowski ▴ 30

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HLA bioconductor bioinformatics

8.2 years ago justinyi10 ▴ 10

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homo.sapiens HLA

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by a23451352 • 0

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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k

107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…

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Comment: readDNAStringSet with non DNA characters

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