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949

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heatmaps

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by ulin.1 • 0

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geneexp pheatmap heatmaps cluster

updated 4 days ago by James W. MacDonald 66k • written 4 days ago by pehove2385 • 0

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612

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gpart heat heatmaps

updated 7 months ago by James W. MacDonald 66k • written 7 months ago by Benjamin • 0

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675

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heatmaps

updated 11 months ago by sayite3688 • 0 • written 11 months ago by dania.khalid • 0

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796

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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 7 months ago by Basti ▴ 780 • written 7 months ago by langziv • 0

5 results • Page 1 of 1

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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k

The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …

Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k

Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

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A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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Popular Question to Dario Strbenac ★ 1.5k