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948

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heatmaps

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by ulin.1 • 0

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796

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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 7 months ago by Basti ▴ 780 • written 7 months ago by langziv • 0

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673

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heatmaps

updated 11 months ago by sayite3688 • 0 • written 11 months ago by dania.khalid • 0

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612

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gpart heat heatmaps

updated 7 months ago by James W. MacDonald 66k • written 7 months ago by Benjamin • 0

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geneexp pheatmap heatmaps cluster

updated 4 days ago by James W. MacDonald 66k • written 4 days ago by pehove2385 • 0

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Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

Answer: ChAMP not available for bioconductor 3.19 by shepherl 3.9k

See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …

Answer: Counter-directional LFC shrinkage by Michael Love 42k

It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.

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Answer: Error in gseDO function

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