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HiCDCPlus
•
reset
0
votes
0
replies
125
views
HiCDCPlus differential interaction error
HiCDCPlus
3 months ago
Irene
• 0
0
votes
2
replies
300
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 5 months ago by
IsMM
• 0
0
votes
1
reply
452
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
1
reply
409
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
1
reply
800
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 11 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
1
reply
461
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 11 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
2
replies
665
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 21 months ago by
scott
• 0 • written 2.2 years ago by
1037144675
• 0
0
votes
1
reply
760
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 2.0 years ago by
merve.sahn
• 0 • written 2.3 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 14 months ago by
Michelle
• 0 • written 2.4 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
635
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 2.0 years ago by
merve.sahn
• 0 • written 2.8 years ago by
Hannah
• 0
3
votes
7
replies
2.2k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.2 years ago by
koushik
• 0 • written 3.5 years ago by
Tay
▴ 10
0
votes
3
replies
848
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.0 years ago by
merve.sahn
• 0 • written 3.5 years ago by
mtS
• 0
12 results • Page
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Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Votes
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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