Bioconductor Histone Chip-Seq

Showing : Histone Chip-Seq • reset

12

votes

6

replies

6.5k

views

Diffbind Histone Chip-Seq Summit size

updated 3.5 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by urjaswita ▴ 40

0

votes

0

replies

1.2k

views

R chip-seq histone chip-seq ggbio

6.9 years ago Ramiro Magno ▴ 100

3

votes

2

replies

1.9k

views

diffbind chipseq histone chip-seq differential binding analysis

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by woongjaej • 0

0

votes

2

replies

1.7k

views

csaw histone chip-seq chip-seq

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by gil.hornung • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All