Bioconductor IdTaxa

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DECIPHER idtaxa

updated 18 months ago by Erik Wright ▴ 150 • written 18 months ago by Till ▴ 30

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IdTaxa CO1

updated 2.3 years ago by Erik Wright ▴ 150 • written 2.6 years ago by nicolaus.adams • 0

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DECIPHER IdTaxa

4.3 years ago sebastian.mynott • 0

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Comment: enrichGOgradient color change by lewis.roper • 0

I know you submitted this months ago but you're an absolute lifesaver mate, thank you

Comment: Warning message when running limma with covariates by Chris ▴ 20

Hi @gordonsmyth. Happy New Year! Wishing you all the best in 2025. Thank you so much for your kind support!

Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

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Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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Scholar to Gordon Smyth 52k

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