Bioconductor KEGGgraph

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KEGGgraph KEGG

updated 6 months ago by Guido Hooiveld ★ 4.1k • written 6 months ago by Fara • 0

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524

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 7 months ago by Guido Hooiveld ★ 4.1k • written 7 months ago by fernanda.backsouza ▴ 30

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enrichKEGG KEGGgraph KEGG

updated 9 months ago by Guido Hooiveld ★ 4.1k • written 9 months ago by cinzia.spagnoli • 0

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390

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igraph KEGGgraph RCy3 GraphNEL

12 weeks ago • updated 8 weeks ago Arindam ▴ 80

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by fernanda.backsouza ▴ 30

5 results • Page 1 of 1

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Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k

Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…

Comment: Can we get beta values with DMRcate package by Melisa Tecik • 0

Thank you so much for the detailed explanation. I have loaded the package and already used dmrcate and extractRanges functions. I had no …

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by fjrsa • 0

I would say baseMean, read counts, L2FC, ... are very similar between the two experiments - that's why I was wondering about the results. …

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k

As said, literally identical on a continuous scale but different in categorical terms.

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by fjrsa • 0

![enter image description here][1] [1]: /media/images/3d53e4b4-f561-41ee-a5d8-6c3c93e7

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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