Bioconductor KEGGgraph

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 11 months ago by fernanda.backsouza ▴ 30

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igraph KEGGgraph RCy3 GraphNEL

6 months ago • updated 5 months ago Arindam ▴ 80

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 11 months ago by James W. MacDonald 68k • written 11 months ago by fernanda.backsouza ▴ 30

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KEGGgraph KEGG

updated 10 months ago by Guido Hooiveld ★ 4.1k • written 10 months ago by Fara • 0

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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