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MTA10
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tutorial/documentation to use oligo/affy for mta1.0 Affymetrix arrays
mta10
affy
analysis
7.8 years ago
iankoudinova
▴ 10
0
votes
2
replies
1.0k
views
Problem when mapping non-core exons with MTA1.0 arrays
mta10
entrez gene identifiers
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
jacorvar
▴ 40
5
votes
4
replies
1.7k
views
Is there any tutorial to perform Mouse/Human Transcriptome microarrays 1.0 ?
mta10
tutorial
affy
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
jacorvar
▴ 40
0
votes
1
reply
2.0k
views
Mouse Transcriptome Assay 1.0 processing and annotation
annotation
MTA10
array processing
updated 8.6 years ago by
jacorvar
▴ 40 • written 9.1 years ago by
alakatos
▴ 130
4 results • Page
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Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
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