updated 5 months ago by
Michael Love
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written 5 months ago by
Tom
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3
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updated 2.0 years ago by
Gordon Smyth
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written 2.0 years ago by
vm.higareda
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Comment: Per gene Covariates
by
Paola
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0
Hi Michael,
I have a similar problem where we want to run a LRT analysis on RNA-Seq to find differences across 4 groups and correcting for…
Comment: deseq2 machine sizing best practices for very large data set
by
aedavids
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0
Hi Michael
These are bulk samples.
I like your idea of running a couple of subsets to get a rough idea about the required resources. I am…
Comment: Error while running DE in DESeq2
by
Michael
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0
Updating Deseq2 1.32.0 error was no longer an issue. May be an issue when using 1.30.1
Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset
by
Michael Love
34k
Agree, noting just that "poscounts" is used quite a bit and fast (also it has been benchmarked in publications a few times). "iterate" is k…
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
by
josephbrown
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0
Regarding your "every gene contains at least one zero" error:
I think when you run `vst()`, it will estimate size factors if they're not…
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