Showing : transcriptomics • reset
0
votes
0
replies
168
views
Job: Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell Transcriptomics SpatialDatasets SpatialData
8 weeks ago Silvio • 0
3
votes
2
replies
330
views
How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
4 months ago Anita ▴ 10
4
votes
5
replies
1.8k
views
DESeq2, time-course interpretation
Transcriptomics TimeCourse DESeq2
updated 12 months ago by 42k • written 12 months ago by • 0
0
votes
4
replies
852
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
14 months ago sreeshmaraj72 • 0
0
votes
1
reply
406
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 15 months ago by 42k • written 15 months ago by • 0
4
votes
5
replies
2.1k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics EnhancedVolcano
updated 15 months ago by ★ 4.0k • written 15 months ago by ▴ 20
4
votes
8
replies
1.5k
views
DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2 Transcriptomics
updated 15 months ago by ★ 13k • written 15 months ago by ▴ 20
0
votes
3
replies
847
views
Understanding edgeR differential expression results
Transcriptomics edgeR DifferentialExpression RNASeqData RNASeq
updated 17 months ago by 51k • written 17 months ago by • 0
0
votes
1
reply
832
views
Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2 Transcriptomics tximport deseq txi
updated 18 months ago by ★ 1.5k • written 18 months ago by ▴ 10
0
votes
1
reply
1.5k
views
Variance stabilization transformation (VST), blind=TRUE
DESeq2 Transcriptomics RNASeq
updated 18 months ago by 42k • written 18 months ago by • 0
0
votes
0
replies
599
views
EdgeR without replication
Transcriptomics
20 months ago kuttibiotech2009 • 0
0
votes
0
replies
616
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics SequencingData
20 months ago Rom • 0
0
votes
0
replies
725
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
20 months ago whduke • 0
0
votes
2
replies
761
views
Questions about `collapseReplicates` function in DESeq2
DESeq2 Transcriptomics
21 months ago Yijing • 0
0
votes
0
replies
580
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
22 months ago Julieta • 0
2
votes
1
reply
1.9k
views
Understanding tximport working with salmon outputs
Transcriptomics tximport
updated 22 months ago by ★ 4.2k • written 22 months ago by ▴ 10
0
votes
3
replies
1.1k
views
DESeq2 - transcript length correction necessary when quantifying reads from ends of transcripts?
Transcriptomics DESeq2
2.0 years ago marius.wenzel • 0
4
votes
6
replies
1.6k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
2.2 years ago mohammedtoufiq91 ▴ 10
1
vote
3
replies
1.2k
views
Identifying DEG between development stages
plant Transcriptomics DESeq2 r
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
2
votes
5
replies
1.5k
views
DESeq2 with baseline correction for gene expression differences
DESeq2 edgeR Transcriptomics
updated 2.4 years ago by 42k • written 2.4 years ago by • 0
2
votes
2
replies
906
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.8 years ago • updated 14 months ago diangomaiga • 0
1
vote
2
replies
1.4k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.9 years ago Barista • 0
0
votes
0
replies
982
views
Job: Senior Bioinformatician - University of Alabama at Birmingham
JobPosting Transcriptomics SingleCell RNA-seq
3.0 years ago lianov • 0
0
votes
0
replies
900
views
Job: [apply by 8/15] PhD scholarship on functional and evolutionary genomics
JobPosting Transcriptomics GenomicVariation
3.0 years ago marie • 0
0
votes
2
replies
1.1k
views
Downloading org.Mm.eg.db after R reinstall
org.Mmu.eg.db Transcriptomics
3.3 years ago Kate • 0
0
votes
0
replies
988
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
3.3 years ago 2323982403 ▴ 60
0
votes
1
reply
826
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics DESeq2
updated 3.4 years ago by 42k • written 3.4 years ago by • 0
0
votes
0
replies
999
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.4 years ago m.jackson • 0
5
votes
5
replies
2.7k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO RNASeqR Transcriptomics
updated 3.4 years ago by 66k • written 3.4 years ago by ▴ 10
0
votes
0
replies
995
views
Job: Computational Biologist at Denali Therapeutics
Transcriptomics SingleCell JobPosting
3.6 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
984
views
NanoStringDiff Not Recognized as Numeric
Bioconductor Transcriptomics NanoStringDiff
updated 3.7 years ago by 1.6k • written 3.7 years ago by ▴ 10
0
votes
0
replies
747
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.3 years ago raquelponti • 0
1
vote
0
replies
1.1k
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
4.5 years ago Laurent Gatto 1.6k
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 4.5 years ago by ▴ 350 • written 4.5 years ago by • 0
0
votes
0
replies
975
views
Job: Bioinformatics Scientist, CNS Transcriptomics at Alnylam Pharmaceuticals, Cambridge MA, USA
scRNA-seq CNS transcriptomics RNAi Job
4.6 years ago Joseph Barry ▴ 10
0
votes
0
replies
806
views
Job: Bionformatician in personalized oncotherapy (BEL)
job bioinformatician immunotherapy genomics transcriptomics Job
4.7 years ago cedric • 0
1
vote
0
replies
923
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
4.8 years ago dezer ▴ 10
2
votes
2
replies
3.1k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 10
2
votes
0
replies
2.4k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.8 years ago Laurent Gatto 1.6k
1
vote
1
reply
986
views
cpm filtering parameter
cpm filtering transcriptomics rnaseq edgeR metatranscriptomics
updated 4.9 years ago by 51k • written 4.9 years ago by ▴ 10
0
votes
0
replies
998
views
Job: Bionformatician Position / Heidelberg
neuroscience data integration transcriptomics Job
5.3 years ago slezak • 0
0
votes
0
replies
843
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
5.3 years ago Wuschel ▴ 10
1
vote
0
replies
1.6k
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
5.4 years ago • updated 5.3 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.5k
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 5.4 years ago by 1.6k
3
votes
4
replies
1.4k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 5.8 years ago by ▴ 80 • written 5.8 years ago by • 0
45 results • Page 1 of 1
Recent ...
Replies
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
Popular Question to Leonardo Collado Torres ★ 1.1k
Scholar to Gordon Smyth 51k
Locations • All
WEHI, Melbourne, Australia, 8 minutes ago
United States, 10 minutes ago
United States, 11 minutes ago
France, 26 minutes ago
Slovakia, 33 minutes ago
Traffic: 588 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6