Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
transcriptomics
•
reset
0
votes
3
replies
630
views
DESeq2 analysis with transcript counts
Transcriptomics
RNASeq
DESeq2
written 3 months ago by
sindhuri
• 0
0
votes
0
replies
169
views
Filtering Steps for proActiv Analysis
Transcriptomics
proActiv
5 months ago
LuciaNhu
• 0
1
vote
6
replies
1.2k
views
New to Deseq2 - DEG questions / MA plot
genomes
DESeq2
Transcriptomics
updated 6 months ago by
ATpoint
★ 4.8k • written 6 months ago by
Newbie
• 0
0
votes
0
replies
322
views
proActiv-promoter analysis
proActiv
Transcriptomics
8 months ago
wang.xiangyu
• 0
0
votes
0
replies
515
views
Job:
Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell
Transcriptomics
SpatialDatasets
SpatialData
10 months ago
Silvio
• 0
3
votes
2
replies
578
views
How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2
Transcriptomics
13 months ago
Anita
▴ 10
4
votes
5
replies
3.3k
views
DESeq2, time-course interpretation
Transcriptomics
TimeCourse
DESeq2
updated 21 months ago by
Michael Love
43k • written 21 months ago by
smac_head
• 0
0
votes
4
replies
1.1k
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
23 months ago
sreeshmaraj72
• 0
0
votes
1
reply
582
views
Time change in expression vs time change in phenotype
Transcriptomics
ExpressionData
DESeq2
updated 2.0 years ago by
Michael Love
43k • written 2.0 years ago by
Ivan
• 0
4
votes
5
replies
3.2k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 2.0 years ago by
Kevin Blighe
★ 4.0k • written 2.0 years ago by
Peter
▴ 20
4
votes
8
replies
2.3k
views
DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2
Transcriptomics
updated 2.0 years ago by
Wolfgang Huber
★ 13k • written 2.0 years ago by
Peter
▴ 20
0
votes
3
replies
1.2k
views
Understanding edgeR differential expression results
Transcriptomics
edgeR
DifferentialExpression
RNASeqData
RNASeq
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Teresa
• 0
0
votes
1
reply
1.1k
views
Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2
Transcriptomics
tximport
deseq
txi
updated 2.3 years ago by
Dario Strbenac
★ 1.6k • written 2.3 years ago by
Hicham
▴ 10
0
votes
1
reply
2.5k
views
Variance stabilization transformation (VST), blind=TRUE
DESeq2
Transcriptomics
RNASeq
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
Jayesh Kumar
• 0
0
votes
0
replies
838
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics
SequencingData
2.4 years ago
Rom
• 0
0
votes
0
replies
905
views
Job:
EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq
Transcriptomics
Pathways
Epigenetics
RNASeq
2.4 years ago
whduke
• 0
0
votes
2
replies
945
views
Questions about `collapseReplicates` function in DESeq2
DESeq2
Transcriptomics
2.5 years ago
Yijing
• 0
0
votes
0
replies
777
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network
Transcriptomics
MicrobiomeData
RNASEQ
WCGNA
2.6 years ago
Julieta
• 0
3
votes
1
reply
3.3k
views
Understanding tximport working with salmon outputs
Transcriptomics
tximport
updated 2.6 years ago by
ATpoint
★ 4.8k • written 2.6 years ago by
Florent
▴ 10
0
votes
3
replies
1.5k
views
DESeq2 - transcript length correction necessary when quantifying reads from ends of transcripts?
Transcriptomics
DESeq2
2.7 years ago
marius.wenzel
• 0
4
votes
6
replies
2.0k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2
Transcriptomics
Visualization
R
limma
2.9 years ago
mohammedtoufiq91
▴ 10
1
vote
3
replies
1.6k
views
Identifying DEG between development stages
plant
Transcriptomics
DESeq2
r
updated 3.1 years ago by
Basti
▴ 780 • written 3.1 years ago by
cicely.day
• 0
2
votes
5
replies
1.8k
views
DESeq2 with baseline correction for gene expression differences
DESeq2
edgeR
Transcriptomics
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
R1337
• 0
2
votes
2
replies
1.1k
views
Deseq2 Resul variation by LFC variation
rnaseqGene
DESeq2
Transcriptomics
3.5 years ago • updated 23 months ago
diangomaiga
• 0
1
vote
2
replies
1.7k
views
Not many DE genes using glmTreat
EdgeR
Bioinformatics
Transcriptomics
Quantseq
3.7 years ago
Barista
• 0
0
votes
0
replies
1.2k
views
Job:
Senior Bioinformatician - University of Alabama at Birmingham
JobPosting
Transcriptomics
SingleCell
RNA-seq
3.7 years ago
lianov
• 0
0
votes
0
replies
1.1k
views
Job:
[apply by 8/15] PhD scholarship on functional and evolutionary genomics
JobPosting
Transcriptomics
GenomicVariation
3.8 years ago
marie
• 0
0
votes
2
replies
1.6k
views
Downloading org.Mm.eg.db after R reinstall
org.Mmu.eg.db
Transcriptomics
4.0 years ago
Kate
• 0
0
votes
0
replies
1.2k
views
Consensus wgcna soft threshold for each data
Transcriptomics
WGCNA
wgcna
4.1 years ago
2323982403
▴ 60
0
votes
1
reply
1.0k
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
seppe.demits
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
4.1 years ago
m.jackson
• 0
5
votes
5
replies
3.8k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO
RNASeqR
Transcriptomics
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
H. Z. Amini
▴ 10
0
votes
0
replies
1.3k
views
Job:
Computational Biologist at Denali Therapeutics
Transcriptomics
SingleCell
JobPosting
4.3 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.2k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 4.5 years ago by
Laurent Gatto
1.6k • written 4.5 years ago by
Pedro
▴ 10
0
votes
0
replies
928
views
Problems with cummeRbund
plot
transcriptomics
differential expression
cummeRbund
5.1 years ago
raquelponti
• 0
1
vote
0
replies
1.2k
views
News:
News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq
course
proteomics
transcriptomics
scrnaseq
News
5.2 years ago
Laurent Gatto
1.6k
0
votes
4
replies
1.4k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.2 years ago by
kevin.rue
▴ 350 • written 5.2 years ago by
atorson
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Scientist, CNS Transcriptomics at Alnylam Pharmaceuticals, Cambridge MA, USA
scRNA-seq
CNS
transcriptomics
RNAi
Job
5.3 years ago
Joseph Barry
▴ 10
0
votes
0
replies
970
views
Job:
Bionformatician in personalized oncotherapy (BEL)
job
bioinformatician
immunotherapy
genomics
transcriptomics
Job
5.4 years ago
cedric
• 0
1
vote
0
replies
1.1k
views
Job:
Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics
gene expression
time series
plant biology
circadian
Job
5.5 years ago
dezer
▴ 10
2
votes
2
replies
4.1k
views
How adjusted p-values are calculated in limma
limma
r
transcriptomics
FDR
statistics
updated 5.6 years ago by
Gordon Smyth
52k • written 5.6 years ago by
Wuschel
▴ 10
2
votes
0
replies
2.6k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
5.6 years ago
Laurent Gatto
1.6k
1
vote
1
reply
1.2k
views
cpm filtering parameter
cpm filtering
transcriptomics
rnaseq
edgeR
metatranscriptomics
updated 5.6 years ago by
Gordon Smyth
52k • written 5.6 years ago by
vm.higareda
▴ 10
0
votes
0
replies
1.2k
views
Job:
Bionformatician Position / Heidelberg
neuroscience
data integration
transcriptomics
Job
6.1 years ago • updated 6.0 years ago
slezak
• 0
0
votes
0
replies
1.0k
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r
metabolomics
KEGG
Proteomics
Transcriptomics
6.1 years ago
Wuschel
▴ 10
1
vote
0
replies
1.8k
views
Job:
Full time and permanent research logistician in Bioinformatics
transcriptomics
proteomics
job
bioinformatician
Job
6.1 years ago
Laurent Gatto
1.6k
1
vote
1
reply
1.7k
views
News:
Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq
deseq2
proteomics
transcriptomics
workshop
News
written 6.2 years ago by
Laurent Gatto
1.6k
3
votes
4
replies
1.7k
views
Writing a loop to clean up protein names
Proteomics
Transcriptomics
Loops
batch-processing
R
updated 6.5 years ago by
Sebastian Gibb
▴ 80 • written 6.5 years ago by
laural710
• 0
48 results • Page
1 of 1
Recent ...
Replies
Comment: DeSeq Strategies for run to run Replication
by
Michael Love
43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Wei Shi
★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Votes
Comment: Differential expression analysis using two TCGA datasets
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
Awards
• All
Popular Question
to
Mengjun
• 0
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
matthew
• 0
Locations
• All
The city by the bay,
42 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
UPF, Barcelona, Spain,
3 hours ago
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform,
3 hours ago
Egypt,
6 hours ago
Traffic: 636 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6