Bioconductor MultipleComparison

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220

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limmaGUI lim MultipleComparison multip

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by roger.moreno.justicia • 0

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747

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Proteomics proDA MultipleComparison

8 months ago t.b.n.nguyen-9 • 0

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664

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 9 months ago by James W. MacDonald 65k • written 10 months ago by a26fd14e • 0

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665

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DESeq2 MultipleComparison r

updated 16 months ago by Michael Love 41k • written 17 months ago by ncorak • 0

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552

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MultipleComparison DESeq2

updated 24 months ago by Michael Love 41k • written 24 months ago by Joshua • 0

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2.2k

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MultipleComparison edgeR DESeq2

written 2.1 years ago by yuet • 0

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667

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factor DESeq2 MultipleComparison

updated 2.5 years ago by swbarnes2 ★ 1.3k • written 2.5 years ago by diegocastano182 • 0

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687

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Linnorm DEG MultipleComparison

updated 6 months ago by shunyip • 0 • written 2.8 years ago by awakumaya • 0

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967

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GeneExpression R limma MultipleComparison

updated 3.4 years ago by James W. MacDonald 65k • written 3.4 years ago by Gwénolé • 0

9 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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