Showing : contrasts • reset
2
votes
8
replies
211
views
DESeq2 numbers of DEGs not consistent with PCA plot
DifferentialExpression DESeq2 contrasts
28 days ago • updated 20 days ago Jane • 0
3
votes
8
replies
288
views
Same contrasts returning different edgeR results
edger limma contrasts DGE
updated 18 months ago by 57k • written 18 months ago by • 0
0
votes
1
reply
285
views
DESeq2 - how to run contrasts leaving out one factor, not just using the reference?
deseq2 contrasts reference level
updated 18 months ago by 33k • written 18 months ago by • 0
0
votes
0
replies
131
views
EdgeR: Transforming coefficients before testing for differential expression
edger contrasts model.matrix circadian
18 months ago ingerslev • 0
0
votes
1
reply
251
views
DESeq2 very complex design - how extract contrasts of interest?
DESeq2 RNA-Seq Multifactorial Design GLM Contrasts
updated 18 months ago by 33k • written 18 months ago by • 0
2
votes
3
replies
296
views
DESeq2 2x2 factorial design: find genes unique to factor A?
deseq2 deseq differential expression contrasts
updated 19 months ago by 33k • written 19 months ago by ▴ 130
0
votes
4
replies
240
views
Setting up contrasts with 'limma', patient data, small number of repeats
limma nanostring contrasts
updated 20 months ago by 43k • written 20 months ago by • 0
0
votes
1
reply
213
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 2.1 years ago by 33k • written 2.1 years ago by • 0
3
votes
5
replies
454
views
Experimental design RNAseq differential expression
edger limma design contrasts batch
updated 2.2 years ago by ★ 26k • written 2.2 years ago by ▴ 30
2
votes
6
replies
327
views
Making sense out of makeContrasts and using coefficents for contrasts
edger contrasts
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
10 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 for allele-specific expression with contrasts between conditions by Michael Love 33k
There is a section in the vignette on interactions that will help you here. You want to test for within-individual effects (`allele`) and c…
Answer: Issues with Tximport by Michael Love 33k
Your file has no version numbers, while your `tx2gene` does have version numbers. While the names look similar, they are not a match. tximp…
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w by Michael Love 33k
This is fine and ignorable, it is coming from upstream packages: our use of a TxDb object to pull out transcript to gene mappings.
Comment: DESeq2: NA's in mcols(object)$betaConv by Michael Love 33k
They are actually rounded to zero in the `dds` which requires integer values.
Comment: Reading multiple data segments from FCS 3.0 file by Prashant • 0
If I would like to automate this in a function, is there any way or function that can figure out `ndataset` from the .fcs file directly? I …
Votes
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
simultaneous use of robust and weighting methods in limma
simultaneous use of robust and weighting methods in limma
Answer: RUVSeq and Salmon
Awards • All
Scholar to Aaron Lun ★ 26k
Teacher to Martin Morgan 25k
Teacher to alexvpickering ▴ 110
Popular Question to k.vitting.seerup ▴ 100
Teacher to A ▴ 40
Locations • All
Naas, Republic of Ireland, 2 minutes ago
United States, 31 minutes ago
United States, 33 minutes ago
European Union, 40 minutes ago
United States, 51 minutes ago
Traffic: 430 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6