Biostar Contrasts

Showing : contrasts • reset

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549

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DifferentialExpression contrasts interaction DESeq2

3 months ago • updated 8 weeks ago Nicole • 0

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339

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contrasts limma voom

updated 5 months ago by Gordon Smyth 46k • written 5 months ago by S T ▴ 80

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229

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DESeq2 contrasts

updated 6 months ago by Michael Love 37k • written 6 months ago by Mir • 0

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397

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topTable voom contrasts

11 months ago James • 0

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328

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DESeq2 phyloseq contrasts

updated 12 months ago by Kevin Blighe 3.6k • written 12 months ago by Mir • 0

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719

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DifferentialExpression DESeq2 contrasts

15 months ago • updated 14 months ago Jane • 0

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570

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edger limma contrasts DGE

updated 2.7 years ago by James W. MacDonald 60k • written 2.7 years ago by s.connell • 0

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498

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deseq2 contrasts reference level

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by ananda2 • 0

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289

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edger contrasts model.matrix circadian

2.7 years ago ingerslev • 0

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638

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DESeq2 RNA-Seq Multifactorial Design GLM Contrasts

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by ananda2 • 0

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668

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deseq2 deseq differential expression contrasts

updated 2.7 years ago by Michael Love 37k • written 2.7 years ago by Keith Hughitt ▴ 170

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473

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limma nanostring contrasts

updated 2.9 years ago by Gordon Smyth 46k • written 2.9 years ago by uridavid.akavia • 0

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365

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deseq2 multiple factor design contrasts experimental design

updated 3.2 years ago by Michael Love 37k • written 3.2 years ago by kehoe • 0

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746

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edger limma design contrasts batch

updated 3.4 years ago by Aaron Lun ★ 27k • written 3.4 years ago by Pietro ▴ 30

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560

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edger contrasts

updated 3.5 years ago by Gordon Smyth 46k • written 3.5 years ago by Maiv • 0

15 results • Page 1 of 1

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Comment: DEXseq error unable to find an inherited method for function NSBS for signature by ta_awwad ▴ 10

Hi there, did you manage to solve this problem? thanks TA

Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120

I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …

Answer: Correlation between two different datasets: between results of RNAseq and absenc by Michael Love 37k

Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…

Answer: Strange Dispersion plot by Michael Love 37k

This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…

Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat by Michael Love 37k

In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…

Votes

Answer: Error in Create switchAnalyzeRlist

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

Answer: the difference between getGEO and getGEOSuppFiles

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