Bioconductor Factor

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357

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factor DESeq2 MultipleComparison

updated 18 months ago by swbarnes2 ★ 1.2k • written 18 months ago by diegocastano182 • 0

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428

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Factor Levels Dispersionestimates DESeq2

19 months ago rafaelsolersanblas ▴ 50

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923

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deseq2 levels factor colData

updated 4.3 years ago by Michael Love 40k • written 4.3 years ago by ariel ▴ 10

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1.2k

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genomicranges RaggedExperiment coercion logical factor

updated 5.5 years ago by Marcel Ramos 660 • written 5.5 years ago by Taran • 0

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2.8k

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deseq2 deseq factor rnaseq

updated 5.9 years ago by Peter Langfelder ★ 2.8k • written 5.9 years ago by sup230 ▴ 30

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1.3k

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genomicranges seqnames factor

6.6 years ago wcstcyx ▴ 30

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626

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R overrrepresentation factor variable factor enrichment

6.6 years ago IOM ▴ 20

7 results • Page 1 of 1

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…

Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k