Bioconductor NIH

Showing : NIH • reset

8

votes

4

replies

5.3k

views

AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 8.3 years ago by vanesa_1230 • 0 • written 10.3 years ago by Sonali Arora ▴ 390

0

votes

0

replies

1.8k

views

software NIH index News

10.9 years ago Sean Davis 21k

1

vote

0

replies

1.7k

views

job nih Job

11.0 years ago • updated 10.9 years ago Sean Davis 21k

3 results • Page 1 of 1

Recent ...

Replies

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Votes

Can NanoString data be analyzed using DESeq2?

Awards • All