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NanoporeRNASeq
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How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
15 months ago • updated 14 months ago
Bernardo
▴ 10
1
vote
1
reply
1.5k
views
read nanopore Fastq file
NanoporeRNASeq
RNASeq
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
sinanoori88
• 0
1
vote
2
replies
1.1k
views
running DESeq2 from nanopore wf-alignment workflow
DESeq2
NanoporeRNASeq
updated 16 months ago by
Michael Love
41k • written 16 months ago by
shahla.kangachar
• 0
0
votes
0
replies
744
views
Job:
Postdoctoral position in Computational Biology - RNA dynamics through Nanopore - Milan (Italy)
NanoporeRNASeq
RNAdynamics
RNAmodifications
3.0 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
634
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression
NanoporeRNASeq
DESeq2
GeneExpression
DEVis
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Ana
• 0
5 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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