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NanoporeRNASeq
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4
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7
replies
1.8k
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How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
14 months ago • updated 13 months ago
Bernardo
▴ 10
1
vote
2
replies
1.1k
views
running DESeq2 from nanopore wf-alignment workflow
DESeq2
NanoporeRNASeq
updated 15 months ago by
Michael Love
41k • written 15 months ago by
shahla.kangachar
• 0
0
votes
1
reply
603
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression
NanoporeRNASeq
DESeq2
GeneExpression
DEVis
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Ana
• 0
0
votes
0
replies
717
views
Job:
Postdoctoral position in Computational Biology - RNA dynamics through Nanopore - Milan (Italy)
NanoporeRNASeq
RNAdynamics
RNAmodifications
2.9 years ago
mattia pelizzola
▴ 200
1
vote
1
reply
1.4k
views
read nanopore Fastq file
NanoporeRNASeq
RNASeq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
sinanoori88
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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Pierre Lindenbaum
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Gordon Smyth
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Jenny Drnevich
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Robert Castelo
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Peter Langfelder
★ 2.9k
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United Kingdom,
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EMBL Heidelberg,
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Finland,
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