Bioconductor NewWave

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NewWave

written 4 months ago by mario • 0

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NewWave

updated 5 months ago by shepherl 3.9k • written 5 months ago by 1135296741 • 0

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NewWave

updated 7 months ago by Fabricio Almeida-Silva ▴ 40 • written 8 months ago by adriana • 0

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NewWave

7 months ago Kilian • 0

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NewWave hgu133a2.db

updated 7 months ago by ATpoint ★ 4.1k • written 7 months ago by roy23032 • 0

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mgu74bv2cdf NewWave hgu133a2.db

10 months ago roma 0

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mgu74bv2cdf NewWave hgu133a2.db

10 months ago roma 0

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NewWave

updated 10 months ago by Gordon Smyth 50k • written 11 months ago by liujy4 • 0

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NewWave

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by SuASNAVASCH • 0

9 results • Page 1 of 1

Recent ...

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Answer: Assymetric MA plot with no overall trend by Michael Love 42k

> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …

Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?

Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0

Thanks @mikelove , Using vst or rlog doesn't improve the segregation nor is there a remarkable difference when I use 1000 or 2000 most vari…

Answer: Batch effect correction: methylome data by zhouwanding ▴ 10

I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…

Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0

Thanks @bioinfguru - I did the 3-D PCA plot ![PC1 vs PC3 plot][1] and also the scree plot ![Scree plot][2] but couldn't make much of the…

Votes

Ensembl 112 has been released.

A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

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