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NewWave
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Statistical test
NewWave
written 2.1 years ago by
mario
• 0
0
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1
reply
818
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 2.1 years ago by
shepherl
4.3k • written 2.1 years ago by
1135296741
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error running exp2grn
NewWave
updated 2.3 years ago by
Fabricio Almeida-Silva
▴ 40 • written 2.4 years ago by
adriana
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.3 years ago
Kilian
• 0
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2
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772
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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave
hgu133a2.db
updated 7 weeks ago by
MurrayMertz
• 0 • written 2.3 years ago by
roy23032
• 0
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13
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Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
2.5 years ago
roma
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14
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Spam:
ost to pst migration software
mgu74bv2cdf
NewWave
hgu133a2.db
2.5 years ago
roma
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2
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1.4k
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Extracting DEG from topTags
NewWave
updated 2.6 years ago by
Gordon Smyth
53k • written 2.6 years ago by
liujy4
• 0
0
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1
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750
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How to use txtimport and do differential expression
NewWave
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
SuASNAVASCH
• 0
9 results • Page
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Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Votes
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
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