Bioconductor NormalyzerDE

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DESeq2 WGCNA Normalization NormalyzerDE BatchEffect

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by suphamon.j ▴ 20

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NormalyzerDE

updated 2.6 years ago by Jakob Willforss • 0 • written 2.7 years ago by Alejandro • 0

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normalyzerde

5.0 years ago Jakob Willforss • 0

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normalyzerde

5.6 years ago Jakob Willforss • 0

4 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.6k

Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

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