Bioconductor PCATools

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DESeq2 eigencorplot PCAtools

4 days ago • updated 1 day ago BioinfGuru ▴ 30

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DESeq2 PCAtools

updated 21 days ago by Michael Love 42k • written 22 days ago by Aaliya • 0

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DESeq2 RSTUDIO PCAtools

updated 22 days ago by swbarnes2 ★ 1.4k • written 24 days ago by Aaliya • 0

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5

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edgeR PCAtools

updated 6 weeks ago by Gordon Smyth 50k • written 7 weeks ago by Fabian • 0

4 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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