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PCAtools
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1
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386
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
10 weeks ago
BioinfGuru
▴ 30
0
votes
2
replies
302
views
PCA plot suggestions
DESeq2
PCAtools
updated 3 months ago by
Michael Love
42k • written 3 months ago by
Aaliya
• 0
0
votes
7
replies
567
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 3 months ago by
swbarnes2
★ 1.4k • written 3 months ago by
Aaliya
• 0
3
votes
5
replies
630
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 3 months ago by
Gordon Smyth
51k • written 4 months ago by
Fabian
• 0
4
votes
8
replies
4.1k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 15 months ago by
CP
• 0 • written 3.2 years ago by
elizabethe819
• 0
1
vote
3
replies
1.3k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 18 months ago by
Kevin Blighe
★ 4.0k • written 18 months ago by
M Tuhin
• 0
1
vote
1
reply
1.1k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 20 months ago by
Kevin Blighe
★ 4.0k • written 20 months ago by
ilaria.debenedictis
• 0
0
votes
1
reply
932
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 2.0 years ago by
James W. MacDonald
66k • written 2.0 years ago by
pterry
• 0
0
votes
3
replies
1.4k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 2.1 years ago by
Federico Marini
▴ 180 • written 2.1 years ago by
m610110001
• 0
5
votes
6
replies
2.8k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.3 years ago
Alan
• 0
3
votes
2
replies
930
views
PCAtools lables missing or out of the plot
PCAtools
3.3 years ago
luca.s
▴ 50
3
votes
3
replies
2.8k
views
PCAtools - change colour of points
PCAtools
updated 3.5 years ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
Terra
• 0
3
votes
15
replies
3.4k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
mschmidt
▴ 10
0
votes
1
reply
1.9k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 3.7 years ago by
Kevin Blighe
★ 4.0k • written 3.7 years ago by
ecg1g15
▴ 20
1
vote
3
replies
1.5k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 3.8 years ago by
Kevin Blighe
★ 4.0k • written 3.8 years ago by
oakhamwolf
• 0
2
votes
4
replies
1.7k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.6 years ago by
Miguel
▴ 20 • written 3.9 years ago by
k.vitting.seerup
▴ 120
16 results • Page
1 of 1
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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