Showing : PCAtools • reset
1
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2
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630
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2 eigencorplot PCAtools
6 months ago BioinfGuru ▴ 70
0
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2
replies
433
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PCA plot suggestions
DESeq2 PCAtools
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
7
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1.3k
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 7 months ago by ★ 1.4k • written 7 months ago by • 0
3
votes
5
replies
1.2k
views
Differing results from plotMDS and PCAtools
edgeR PCAtools
updated 8 months ago by 52k • written 8 months ago by • 0
4
votes
8
replies
4.7k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse RNAseq PCAtools
updated 20 months ago by • 0 • written 3.5 years ago by • 0
1
vote
3
replies
1.5k
views
Adding ellipse in PCAtools biplot
Biplot FactoMineR proteomics PCAtools ellipse
updated 22 months ago by ★ 4.0k • written 22 months ago by • 0
1
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1
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1.3k
views
PCA input data from DRAGEN RNA pipeline
illumina PCAtools PCA
updated 2.0 years ago by ★ 4.0k • written 2.0 years ago by • 0
0
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1
reply
1.0k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools bioconductor
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
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3
replies
1.6k
views
I got error when visualizing my PCA
PCAtools pcaExplorer pcaMethods
updated 2.4 years ago by ▴ 180 • written 2.4 years ago by • 0
5
votes
6
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3.3k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools edgeR pcaExplorer RNASeq RNAseq123
2.6 years ago Alan • 0
3
votes
2
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1.1k
views
PCAtools lables missing or out of the plot
PCAtools
3.7 years ago luca.s ▴ 50
3
votes
3
replies
3.2k
views
PCAtools - change colour of points
PCAtools
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
3
votes
15
replies
3.6k
views
How to ellipse a subset of data PCA biplot?
biplot PCA RNASeq PCAtools
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 10
0
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1
reply
2.1k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools biplot DESeq2 RNASeq PCA
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 30
1
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3
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1.7k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
2
votes
4
replies
1.9k
views
Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 3.0 years ago by ▴ 20 • written 4.3 years ago by ▴ 120
16 results • Page 1 of 1
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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
Hi, what's the output from `dim(spe)`?
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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