Bioconductor PCAtools

Showing : PCAtools • reset

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302

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COTAN PCAtools

13 months ago Silvia • 0

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1.2k

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DESeq2 eigencorplot PCAtools

21 months ago BioinfGuru ▴ 70

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819

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DESeq2 PCAtools

updated 21 months ago by Michael Love 43k • written 22 months ago by Aaliya • 0

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2.9k

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DESeq2 RSTUDIO PCAtools

updated 22 months ago by swbarnes2 ★ 1.4k • written 22 months ago by Aaliya • 0

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2.6k

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edgeR PCAtools

written 22 months ago by Fabian • 0

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6.7k

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ellipse RNAseq PCAtools

updated 2.9 years ago by CP • 0 • written 4.7 years ago by elizabethe819 • 0

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2.2k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 3.1 years ago by Kevin Blighe ★ 4.0k • written 3.1 years ago by M Tuhin • 0

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2.1k

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illumina PCAtools PCA

updated 3.2 years ago by Kevin Blighe ★ 4.0k • written 3.2 years ago by ilaria.debenedictis • 0

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1.4k

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PCAtools bioconductor

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by pterry • 0

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2.6k

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PCAtools pcaExplorer pcaMethods

updated 3.6 years ago by Federico Marini ▴ 180 • written 3.6 years ago by m610110001 • 0

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4.6k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.8 years ago Alan • 0

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1.5k

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PCAtools

4.9 years ago luca.s ▴ 50

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4.2k

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PCAtools

updated 5.1 years ago by Kevin Blighe ★ 4.0k • written 5.1 years ago by Terra • 0

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4.7k

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biplot PCA RNASeq PCAtools

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by mschmidt ▴ 10

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2.7k

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PCAtools biplot DESeq2 RNASeq PCA

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by ecg1g15 ▴ 30

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2.3k

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PCATools

updated 5.3 years ago by Kevin Blighe ★ 4.0k • written 5.3 years ago by oakhamwolf • 0

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2.6k

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EDA pcaExplorer PCAtools PCA

updated 4.2 years ago by Miguel ▴ 20 • written 5.5 years ago by k.vitting.seerup ▴ 120

17 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Subsetting data verses contrasts [DESeq2]?

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Popular Question to Peter Hickey ▴ 760