Bioconductor PCATools

Showing : PCATools • reset

3

votes

5

replies

386

views

edgeR PCAtools

updated 5 weeks ago by Gordon Smyth 50k • written 5 weeks ago by Fabian • 0

0

votes

2

replies

204

views

DESeq2 PCAtools

updated 9 days ago by Michael Love 41k • written 10 days ago by Aaliya • 0

0

votes

8

replies

342

views

DESeq2 RSTUDIO PCAtools

updated 10 days ago by swbarnes2 ★ 1.3k • written 12 days ago by Aaliya • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: fgsea significant result

Awards • All

Scholar to ATpoint ★ 4.1k