Bioconductor PLGEM

Showing : PLGEM • reset

votes

replies

955

views

PLGEM

10.6 years ago pstopka • 0

votes

replies

1.5k

views

miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem

13.3 years ago Norman Pavelka ▴ 140

votes

replies

1.6k

views

plgem plgem

updated 13.6 years ago by Olli Kannaste ▴ 20 • written 13.6 years ago by Norman Pavelka ▴ 140

votes

1.3k

views

Biobase plgem Biobase plgem

14.3 years ago Norman Pavelka ▴ 140

votes

replies

1.1k

views

Biobase plgem Biobase plgem

14.3 years ago Norman Pavelka ▴ 140

votes

replies

1.1k

views

limma plgem limma plgem

14.3 years ago Norman Pavelka ▴ 140

votes

replies

1.3k

views

limma plgem limma plgem

14.3 years ago Norman Pavelka ▴ 140

votes

replies

1.5k

views

limma plgem limma plgem

14.3 years ago Amin Moghaddasi ▴ 130

votes

replies

2.6k

views

Microarray Proteomics limma plgem Microarray Proteomics limma plgem

updated 15.2 years ago by Yolande Tra ▴ 120 • written 15.2 years ago by Pavelka, Norman ▴ 70

votes

replies

1.3k

views

plgem cycle plgem cycle

15.3 years ago Pavelka, Norman ▴ 70

votes

replies

1.1k

views

plgem plgem

15.5 years ago Pavelka, Norman ▴ 70

11 results • Page 1 of 1

Recent ...

Replies

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k

Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening in a clean install

Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Votes

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All