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PLGEM
•
reset
0
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0
replies
824
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calculating PLGEM p-values...
PLGEM
9.7 years ago
pstopka
• 0
0
votes
0
replies
1.4k
views
PLGEM on metabolomic data?
miRNA
Metabolomics
Proteomics
Normalization
plgem
miRNA
Metabolomics
Proteomics
plgem
12.4 years ago
Norman Pavelka
▴ 140
0
votes
4
replies
1.4k
views
Fwd: FW: plgem
plgem
plgem
updated 12.7 years ago by
Olli Kannaste
▴ 20 • written 12.7 years ago by
Norman Pavelka
▴ 140
0
votes
1
reply
1.1k
views
Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
13.4 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.0k
views
Fwd: Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
13.4 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
994
views
Fwd: plgem for spectral counts
limma
plgem
limma
plgem
13.4 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.2k
views
plgem for spectral counts
limma
plgem
limma
plgem
13.4 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.4k
views
limma for spectral counts
limma
plgem
limma
plgem
13.4 years ago
Amin Moghaddasi
▴ 130
0
votes
5
replies
2.3k
views
Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray
Proteomics
limma
plgem
Microarray
Proteomics
limma
plgem
updated 14.3 years ago by
Yolande Tra
▴ 120 • written 14.3 years ago by
Pavelka, Norman
▴ 70
0
votes
0
replies
1.1k
views
replicable of *PLGEM*
plgem
cycle
plgem
cycle
14.4 years ago
Pavelka, Norman
▴ 70
0
votes
0
replies
971
views
'plgem' package bug fix
plgem
plgem
14.6 years ago
Pavelka, Norman
▴ 70
11 results • Page
1 of 1
Recent ...
Replies
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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