Bioconductor PLGEM

Showing : PLGEM • reset

votes

replies

823

views

PLGEM

9.7 years ago pstopka • 0

votes

replies

1.4k

views

miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem

12.4 years ago Norman Pavelka ▴ 140

votes

replies

1.4k

views

plgem plgem

updated 12.7 years ago by Olli Kannaste ▴ 20 • written 12.7 years ago by Norman Pavelka ▴ 140

votes

1.1k

views

Biobase plgem Biobase plgem

13.4 years ago Norman Pavelka ▴ 140

votes

replies

1.0k

views

Biobase plgem Biobase plgem

13.4 years ago Norman Pavelka ▴ 140

votes

replies

993

views

limma plgem limma plgem

13.4 years ago Norman Pavelka ▴ 140

votes

replies

1.2k

views

limma plgem limma plgem

13.4 years ago Norman Pavelka ▴ 140

votes

replies

1.4k

views

limma plgem limma plgem

13.4 years ago Amin Moghaddasi ▴ 130

votes

replies

2.3k

views

Microarray Proteomics limma plgem Microarray Proteomics limma plgem

updated 14.3 years ago by Yolande Tra ▴ 120 • written 14.3 years ago by Pavelka, Norman ▴ 70

votes

replies

1.1k

views

plgem cycle plgem cycle

14.4 years ago Pavelka, Norman ▴ 70

votes

replies

970

views

plgem plgem

14.6 years ago Pavelka, Norman ▴ 70

11 results • Page 1 of 1

Recent ...

Replies

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

Awards • All