Showing : PLGEM • reset
0
votes
0
replies
718
views
calculating PLGEM p-values...
PLGEM
9.0 years ago pstopka • 0
0
votes
0
replies
1.3k
views
PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
11.7 years ago Norman Pavelka ▴ 140
0
votes
4
replies
1.2k
views
Fwd: FW: plgem
plgem plgem
updated 12.0 years ago by ▴ 20 • written 12.0 years ago by ▴ 140
0
votes
1
reply
1.0k
views
Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.7 years ago Norman Pavelka ▴ 140
0
votes
0
replies
916
views
Fwd: Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.7 years ago Norman Pavelka ▴ 140
0
votes
0
replies
892
views
Fwd: plgem for spectral counts
limma plgem limma plgem
12.7 years ago Norman Pavelka ▴ 140
0
votes
0
replies
1.1k
views
plgem for spectral counts
limma plgem limma plgem
12.7 years ago Norman Pavelka ▴ 140
0
votes
0
replies
1.2k
views
limma for spectral counts
limma plgem limma plgem
12.7 years ago Amin Moghaddasi ▴ 130
0
votes
5
replies
2.1k
views
Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 13.7 years ago by ▴ 120 • written 13.7 years ago by ▴ 70
0
votes
0
replies
1.0k
views
replicable of *PLGEM*
plgem cycle plgem cycle
13.7 years ago Pavelka, Norman ▴ 70
0
votes
0
replies
853
views
'plgem' package bug fix
plgem plgem
13.9 years ago Pavelka, Norman ▴ 70
11 results • Page 1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards • All
Popular Question to swbarnes2 ★ 1.4k
Popular Question to Stephanie M. Gogarten ▴ 870
Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
Locations • All
The city by the bay, 4 minutes ago
WEHI, Melbourne, Australia, 31 minutes ago
United States, 37 minutes ago
United States, 1 hour ago
UPF, Barcelona, Spain, 1 hour ago
Traffic: 460 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6