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POWER
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0
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863
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gwas power calculation for quantitative traits
power
GWAS
written 3.5 years ago by
rajya82
• 0
6
votes
4
replies
1.5k
views
Discrepancy in effect size calculation between ordinary Cohens D and LIMMA
CohensD
power
limma
effectsize
3.9 years ago
MoltenLight
▴ 10
2
votes
1
reply
778
views
Detecting the power in differential expression
POWER
DESEQ2
edger
LIMMA
DIfferential expression
5.3 years ago • updated 5.2 years ago
Beginner
• 0
0
votes
2
replies
5.2k
views
WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 9.0 years ago by
Peter Langfelder
★ 3.0k • written 9.0 years ago by
mrodrigues.fernanda
▴ 10
4 results • Page
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Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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Wolfgang Huber
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Hervé Pagès
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