Bioconductor Peakset

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DiffBind Peakset

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by hkitano • 0

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motifs TF peakset plots

8.7 years ago rbronste ▴ 60

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peakset diffbind

updated 9.0 years ago by Gord Brown ▴ 670 • written 9.0 years ago by wesley.cai • 0

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r bioinformatics peakset

updated 2.6 years ago by montuorikandi1759 • 0 • written 9.8 years ago by Jurat Shahidin ▴ 80

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diffbind peakset

updated 9.9 years ago by Gord Brown ▴ 670 • written 9.9 years ago by eli7javasky • 0

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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