Bioconductor Polyester

Showing : Polyester • reset

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696

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polyester

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Seongwoo Han ▴ 10

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729

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polyester

3.0 years ago Seongwoo Han ▴ 10

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804

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polyester dispersion

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by catalina.gonzalez-gomez • 0

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959

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polyester

updated 4.7 years ago by shepherl 4.2k • written 4.7 years ago by avaniknejad686 • 0

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2.4k

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polyester simulation RNA-seq syntheticdata

updated 5.0 years ago by Gordon Smyth 53k • written 5.0 years ago by Endre Sebestyén ▴ 70

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933

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polyester

5.6 years ago liorglic ▴ 10

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934

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polyester

6.0 years ago Michael Love 43k

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1.3k

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rna-seq polyester simulation time course

7.9 years ago fa.gholizadeh89 • 0

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2.0k

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simulation count matrix RNA-seq Polyester

updated 7.9 years ago by Alyssa Frazee ▴ 210 • written 7.9 years ago by fa.gholizadeh89 • 0

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1.4k

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polyester rnaseq simulation

8.2 years ago sseo2 • 0

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1.9k

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rnaseq polyester

updated 9.3 years ago by Alyssa Frazee ▴ 210 • written 9.3 years ago by krishna312 • 0

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2.5k

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polyester rnaseq

updated 9.4 years ago by jmfu ▴ 10 • written 9.4 years ago by aditya892 • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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