Bioconductor Polyester

Showing : Polyester • reset

votes

713

views

polyester

updated 2.6 years ago by Michael Love 43k • written 2.6 years ago by Seongwoo Han ▴ 10

votes

replies

752

views

polyester

3.1 years ago Seongwoo Han ▴ 10

votes

replies

838

views

polyester dispersion

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by catalina.gonzalez-gomez • 0

votes

979

views

polyester

updated 4.8 years ago by shepherl 4.2k • written 4.8 years ago by avaniknejad686 • 0

votes

replies

2.5k

views

polyester simulation RNA-seq syntheticdata

updated 5.1 years ago by Gordon Smyth 53k • written 5.1 years ago by Endre Sebestyén ▴ 70

votes

replies

959

views

polyester

5.7 years ago liorglic ▴ 10

vote

replies

970

views

polyester

6.2 years ago Michael Love 43k

votes

replies

1.3k

views

rna-seq polyester simulation time course

8.0 years ago fa.gholizadeh89 • 0

votes

replies

2.0k

views

simulation count matrix RNA-seq Polyester

updated 8.0 years ago by Alyssa Frazee ▴ 210 • written 8.0 years ago by fa.gholizadeh89 • 0

votes

replies

1.5k

views

polyester rnaseq simulation

8.4 years ago sseo2 • 0

votes

1.9k

views

rnaseq polyester

updated 9.5 years ago by Alyssa Frazee ▴ 210 • written 9.5 years ago by krishna312 • 0

votes

replies

2.5k

views

polyester rnaseq

updated 9.5 years ago by jmfu ▴ 10 • written 9.5 years ago by aditya892 • 0

12 results • Page 1 of 1

Recent ...

Replies

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All