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Polyester
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7
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2.6k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 9.6 years ago by
jmfu
▴ 10 • written 9.6 years ago by
aditya892
• 0
0
votes
2
replies
2.5k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
Endre Sebestyén
▴ 70
0
votes
2
replies
2.1k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 8.1 years ago by
Alyssa Frazee
▴ 210 • written 8.1 years ago by
fa.gholizadeh89
• 0
2
votes
1
reply
2.0k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 9.5 years ago by
Alyssa Frazee
▴ 210 • written 9.5 years ago by
krishna312
• 0
0
votes
0
replies
1.5k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
8.4 years ago
sseo2
• 0
0
votes
0
replies
1.3k
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
8.1 years ago
fa.gholizadeh89
• 0
0
votes
1
reply
994
views
Error message
polyester
updated 4.9 years ago by
shepherl
4.3k • written 4.9 years ago by
avaniknejad686
• 0
1
vote
0
replies
982
views
Polyester's simulate_experiment man pages / vignette description
polyester
6.2 years ago
Michael Love
43k
0
votes
0
replies
973
views
Polyester - simulate_experiment_countmat with gtf
polyester
5.8 years ago
liorglic
▴ 10
0
votes
0
replies
854
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
catalina.gonzalez-gomez
• 0
0
votes
0
replies
771
views
polyester running question
polyester
3.2 years ago
Seongwoo Han
▴ 10
0
votes
1
reply
724
views
polyester biases
polyester
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
Seongwoo Han
▴ 10
12 results • Page
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Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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Frances Turner
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maltethodberg
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mohammedtoufiq91
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Lluís Revilla Sancho
▴ 760
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