Showing : Polyester • reset
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Using Polyester to simulate large number of reads from a large transcriptome
polyester rnaseq
updated 9.6 years ago by ▴ 10 • written 9.6 years ago by • 0
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2
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2.5k
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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 5.2 years ago by 53k • written 5.2 years ago by ▴ 70
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2
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2.1k
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 8.1 years ago by ▴ 210 • written 8.1 years ago by • 0
2
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1
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2.0k
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polyester: adding noise to RNASeq counts?
rnaseq polyester
updated 9.5 years ago by ▴ 210 • written 9.5 years ago by • 0
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0
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1.5k
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
8.4 years ago sseo2 • 0
0
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0
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1.3k
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
8.1 years ago fa.gholizadeh89 • 0
0
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1
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994
views
Error message
polyester
updated 4.9 years ago by 4.3k • written 4.9 years ago by • 0
1
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0
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982
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Polyester's simulate_experiment man pages / vignette description
polyester
6.2 years ago Michael Love 43k
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0
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973
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Polyester - simulate_experiment_countmat with gtf
polyester
5.8 years ago liorglic ▴ 10
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0
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854
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Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester dispersion
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
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0
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771
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polyester running question
polyester
3.2 years ago Seongwoo Han ▴ 10
0
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1
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724
views
polyester biases
polyester
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 10
12 results • Page 1 of 1
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Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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