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Rbiopaxparser
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bug in nem's transitive.reduction? (and thus rBiopaxParser)
nem
graphs
rbiopaxparser
7.3 years ago
Ramon Diaz-Uriarte
▴ 70
0
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1
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1.1k
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Rbiopaxparser: how to extract a subnetwork from a pathway
Rbiopaxparser
updated 9.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.6 years ago by
Guido Leoni
▴ 200
0
votes
2
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1.2k
views
rBiopaxParser error
rBiopaxParser
rBiopaxParser
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
suzy.stiegelmeyer@syngenta.com
▴ 40
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4
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1.3k
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rBiopaxParser, Reactome and namespaces
rBiopaxParser
rBiopaxParser
updated 11.0 years ago by
Frank Kramer
▴ 60 • written 11.0 years ago by
Paul Shannon
▴ 470
0
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0
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1.1k
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BioPAX parsing
Pathways
Network
Rgraphviz
rBiopaxParser
Pathways
Network
Rgraphviz
rBiopaxParser
11.6 years ago
Frank Kramer
▴ 10
5 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Votes
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
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