Showing : Regression • reset
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Reference on linear models [was LIMMA makeContrasts question]
Regression limma Regression limma
19.2 years ago Gordon Smyth 53k
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880
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Reference on linear models
Regression limma Regression limma
19.2 years ago Katherine Lawler ▴ 10
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1.1k
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tricky batch problem
Metabolomics Regression Metabolomics Regression
19.2 years ago E. Schwarz ▴ 10
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838
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December Courses: (1) R/Splus Fundamentals and Programming Techniques (2) Regression Modeling Strategies in R/Splus
Regression Regression
19.3 years ago sue@xlsolutions-corp.com ▴ 570
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847
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(1) R/Splus Advanced Programming, NYC, Sept 11-12 (2) Regression Modeling Strategies in R/Splus, Sept 28-29
Regression Regression
19.4 years ago sue@xlsolutions-corp.com ▴ 570
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.5 years ago Gordon Smyth 53k
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3 Courses: (1) Prof Frank Harrell *** Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals and Progr…
GO Regression GO Regression
19.5 years ago sue@xlsolutions-corp.com ▴ 570
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830
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Limma toptable question
Microarray Regression limma Microarray Regression limma
20.2 years ago Gordon Smyth 53k
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1.4k
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permutation/resampling FDR correction
Regression limma Regression limma
20.6 years ago Matthew Hannah ▴ 940
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980
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Binary regression trees
Regression Regression
updated 20.8 years ago by ▴ 210 • written 20.8 years ago by ▴ 10
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LIMMA:design (1, 2, 3, 3 ) , I got EXCITING results what could be the logic, since i have 2 replicates for 3rd group only?
Microarray GO Regression affy limma Microarray GO Regression affy limma
20.8 years ago Gordon Smyth 53k
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2.8k
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Cox MTP question
Microarray Regression multtest Microarray Regression multtest
20.8 years ago kpollard ▴ 110
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4.1k
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multtest and Cox regression
Regression multtest Regression multtest
updated 20.8 years ago by ▴ 10 • written 20.8 years ago by ▴ 140
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874
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Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
20.8 years ago david neil hayes ▴ 70
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2.6k
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Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 21.1 years ago by ▴ 360 • written 21.1 years ago by ▴ 620
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1.2k
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
21.2 years ago michael watson IAH-C ★ 3.4k
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1.2k
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
21.2 years ago Gordon Smyth 53k
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954
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Re: limma linear model [was: (no subject)]
Regression Regression
21.3 years ago karen ▴ 30
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1.0k
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limma linear model [was: (no subject)]
Regression Regression
21.3 years ago Gordon Smyth 53k
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987
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re: Loess
Regression Regression
21.4 years ago David Lee Duewer ▴ 40
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1.2k
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma convert GO Regression limma convert
21.5 years ago Gordon Smyth 53k
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1.2k
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
21.5 years ago Matthew Hannah ▴ 940
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1.2k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.5 years ago Gordon Smyth 53k
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1.2k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.5 years ago Matthew Hannah ▴ 940
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839
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Design matrix with multiple genotypes + quantified variables
Regression Regression
21.5 years ago Matthew Hannah ▴ 940
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2
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1.4k
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Drosophila GeneChip analysis
Regression Regression
updated 21.7 years ago by ▴ 620 • written 21.7 years ago by ▴ 30
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1.2k
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Interpretation of output of AffyRNAdeg and hist commands
Microarray Regression Cancer affyPLM Microarray Regression Cancer affyPLM
21.8 years ago James W. MacDonald 68k
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M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 22.0 years ago by ★ 6.0k • written 22.0 years ago by ★ 2.0k
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1.5k
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question about limma fit differences?
Regression limma Regression limma
updated 22.0 years ago by 53k • written 22.0 years ago by ▴ 20
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1.3k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
22.0 years ago Wolfgang Huber ★ 13k
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1.1k
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mean versus linear model?
Regression limma Regression limma
updated 22.1 years ago by ★ 6.0k • written 22.1 years ago by ▴ 340
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Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
22.3 years ago A.J. Rossini ▴ 810
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1.3k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
22.3 years ago Wolfgang Huber ★ 13k
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951
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Off topic: predoctoral grant
Regression Survival Cancer Regression Survival Cancer
22.4 years ago Ramon Diaz ★ 1.1k
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1.0k
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p-value adjustment when two or more genes are compared at same time
Regression Cancer multtest Regression Cancer multtest
22.5 years ago Jason Liao ▴ 10
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1.6k
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Huber et al: Variance stabilization ...
Microarray Regression Microarray Regression
updated 23.0 years ago by ★ 13k • written 23.0 years ago by ▴ 60
136 results • Page 3 of 3
Recent ...
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Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
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Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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